RNA–Protein interactions for RNA: YOR204W

DED1, Transcript of ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, yeast

Gene DED1, Length 1,815 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DED1	YOR204W	SRP54	P20424	541 aa	Known RBP	13.37	□□□□□ -0.27
DED1	YOR204W	RPL8B	P29453	256 aa	Known RBP	13.37	□□□□□ -0.27
DED1	YOR204W	FOL1	P53848	824 aa		13.37	□□□□□ -0.27
DED1	YOR204W	CPA2	P03965	1118 aa	Known RBP	13.36	□□□□□ -0.27
DED1	YOR204W	SIS2	P36024	562 aa		13.36	□□□□□ -0.27
DED1	YOR204W	TUS1	Q06412	1307 aa		13.36	□□□□□ -0.27
DED1	YOR204W	TIF4631	P39935	952 aa	Known RBP	13.36	□□□□□ -0.27
DED1	YOR204W	SWI4	P25302	1093 aa	Known RBP	13.35	□□□□□ -0.27
DED1	YOR204W	YHL017W	P38745	532 aa		13.35	□□□□□ -0.27
DED1	YOR204W	HRQ1	Q05549	1077 aa		13.35	□□□□□ -0.27
DED1	YOR204W	NUC1	P08466	329 aa		13.34	□□□□□ -0.27
DED1	YOR204W	RNR3	P21672	869 aa	Known RBP	13.34	□□□□□ -0.27
DED1	YOR204W	MAL31	P38156	614 aa		13.34	□□□□□ -0.27
DED1	YOR204W	RPN10	P38886	268 aa	Known RBP	13.34	□□□□□ -0.27
DED1	YOR204W	UBP9	P39967	754 aa		13.34	□□□□□ -0.27
DED1	YOR204W	BUD6	P41697	788 aa		13.34	□□□□□ -0.27
DED1	YOR204W	SUE1	Q06524	206 aa		13.34	□□□□□ -0.27
DED1	YOR204W	BIK1	P11709	440 aa		13.34	□□□□□ -0.27
DED1	YOR204W	ISW2	Q08773	1120 aa		13.34	□□□□□ -0.27
DED1	YOR204W	ELG1	Q12050	791 aa		13.34	□□□□□ -0.27
DED1	YOR204W	GIN4	Q12263	1142 aa		13.34	□□□□□ -0.27
DED1	YOR204W	VPS1	P21576	704 aa	Known RBP	13.33	□□□□□ -0.28
DED1	YOR204W	PRX1	P34227	261 aa	Known RBP	13.33	□□□□□ -0.28
DED1	YOR204W	FBP1	P09201	348 aa		13.32	□□□□□ -0.28
DED1	YOR204W	MBR1	P23493	339 aa		13.32	□□□□□ -0.28
DED1	YOR204W	RFC5	P38251	354 aa		13.32	□□□□□ -0.28
DED1	YOR204W	PCI8	P40512	444 aa		13.32	□□□□□ -0.28
DED1	YOR204W	ALG2	P43636	503 aa		13.32	□□□□□ -0.28
DED1	YOR204W	UBP10	P53874	792 aa	Predicted RBP	13.32	□□□□□ -0.28
DED1	YOR204W	PSK2	Q08217	1101 aa		13.32	□□□□□ -0.28
DED1	YOR204W	YPL150W	Q12152	901 aa		13.32	□□□□□ -0.28
DED1	YOR204W	LSP1	Q12230	341 aa	Known RBP	13.32	□□□□□ -0.28
DED1	YOR204W	HSP82	P02829	709 aa	Known RBP	13.32	□□□□□ -0.28
DED1	YOR204W	MET6	P05694	767 aa	Known RBP	13.32	□□□□□ -0.28
DED1	YOR204W	CDC6	P09119	513 aa		13.32	□□□□□ -0.28
DED1	YOR204W	STI1	P15705	589 aa	Known RBP RIP-Chip data	13.32	□□□□□ -0.28	not detected
DED1	YOR204W	VPS24	P36095	224 aa	Known RBP	13.32	□□□□□ -0.28
DED1	YOR204W	MYO1	P08964	1928 aa		13.31	□□□□□ -0.28
DED1	YOR204W	DIT2	P21595	489 aa		13.31	□□□□□ -0.28
DED1	YOR204W	BMH2	P34730	273 aa	Known RBP	13.31	□□□□□ -0.28
DED1	YOR204W	DSE3	Q08729	430 aa		13.31	□□□□□ -0.28
DED1	YOR204W	RXT2	P38255	430 aa		13.3	□□□□□ -0.28
DED1	YOR204W	MDM1	Q01846	1127 aa		13.3	□□□□□ -0.28
DED1	YOR204W	YDR341C	Q05506	607 aa	Known RBP	13.29	□□□□□ -0.28
DED1	YOR204W	YDJ1	P25491	409 aa	Known RBP	13.29	□□□□□ -0.28
DED1	YOR204W	TTI1	P36097	1038 aa		13.29	□□□□□ -0.28
DED1	YOR204W	NDT80	P38830	627 aa		13.29	□□□□□ -0.28
DED1	YOR204W	VPS45	P38932	577 aa		13.29	□□□□□ -0.28
DED1	YOR204W	RRT6	P53117	311 aa	Predicted RBP	13.29	□□□□□ -0.28
DED1	YOR204W	GIS4	Q04233	774 aa		13.29	□□□□□ -0.28
DED1	YOR204W	RDS1	P25611	832 aa		13.28	□□□□□ -0.28
DED1	YOR204W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	13.28	□□□□□ -0.28	not detected
DED1	YOR204W	MAL33	P38157	468 aa		13.28	□□□□□ -0.28
DED1	YOR204W	YJL007C	P47080	104 aa		13.28	□□□□□ -0.28
DED1	YOR204W	CIT1	P00890	479 aa		13.27	□□□□□ -0.28
DED1	YOR204W	YML037C	Q03703	340 aa		13.27	□□□□□ -0.28
DED1	YOR204W	UTP4	Q06679	776 aa	Known RBP	13.27	□□□□□ -0.28
DED1	YOR204W	TYW1	Q08960	810 aa	Known RBP	13.27	□□□□□ -0.28
DED1	YOR204W	ERG12	P07277	443 aa		13.27	□□□□□ -0.29
DED1	YOR204W	CBP3	P21560	335 aa		13.27	□□□□□ -0.29
DED1	YOR204W	BDH2	P39713	417 aa		13.27	□□□□□ -0.29
DED1	YOR204W	DCS2	Q12123	353 aa		13.27	□□□□□ -0.29
DED1	YOR204W	OCT1	P35999	772 aa		13.26	□□□□□ -0.29
DED1	YOR204W	ASE1	P50275	885 aa		13.26	□□□□□ -0.29
DED1	YOR204W	CLF1	Q12309	687 aa	Predicted RBP	13.26	□□□□□ -0.29
DED1	YOR204W	PEX14	P53112	341 aa		13.25	□□□□□ -0.29
DED1	YOR204W	GDE1	Q02979	1223 aa		13.25	□□□□□ -0.29
DED1	YOR204W	SUB2	Q07478	446 aa	Known RBP	13.25	□□□□□ -0.29
DED1	YOR204W	TOM71	P38825	639 aa	Known RBP	13.24	□□□□□ -0.29
DED1	YOR204W	HST1	P53685	503 aa		13.24	□□□□□ -0.29
DED1	YOR204W	HVG1	P0CE11	249 aa		13.23	□□□□□ -0.29
DED1	YOR204W	YGL138C	P53122	345 aa		13.23	□□□□□ -0.29
DED1	YOR204W	PIL1	P53252	339 aa	Known RBP	13.23	□□□□□ -0.29
DED1	YOR204W	PEX19	Q07418	342 aa		13.23	□□□□□ -0.29
DED1	YOR204W	PES4	P39684	611 aa		13.23	□□□□□ -0.29
DED1	YOR204W	SOL4	P53315	255 aa		13.23	□□□□□ -0.29
DED1	YOR204W	UBX5	Q06682	500 aa		13.23	□□□□□ -0.29
DED1	YOR204W	GET3	Q12154	354 aa	Known RBP	13.23	□□□□□ -0.29
DED1	YOR204W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	13.23	□□□□□ -0.29	not detected
DED1	YOR204W	RAD18	P10862	487 aa		13.22	□□□□□ -0.29
DED1	YOR204W	MSP1	P28737	362 aa		13.22	□□□□□ -0.29
DED1	YOR204W	PHO88	P38264	188 aa	Predicted RBP	13.22	□□□□□ -0.29
DED1	YOR204W	CIR1	P42940	261 aa		13.22	□□□□□ -0.29
DED1	YOR204W	SMD2	Q06217	110 aa	Known RBP	13.22	□□□□□ -0.29
DED1	YOR204W	LYS14	P40971	790 aa		13.21	□□□□□ -0.29
DED1	YOR204W	SAM1	P10659	382 aa	Known RBP	13.2	□□□□□ -0.3
DED1	YOR204W	FRS2	P15625	503 aa	Known RBP	13.2	□□□□□ -0.3
DED1	YOR204W	IXR1	P33417	597 aa		13.2	□□□□□ -0.3
DED1	YOR204W	ETP1	P38748	585 aa	Known RBP	13.2	□□□□□ -0.3
DED1	YOR204W	TMA64	Q04600	565 aa	Known RBP	13.2	□□□□□ -0.3
DED1	YOR204W	VIP1	Q06685	1146 aa	Known RBP	13.2	□□□□□ -0.3
DED1	YOR204W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	13.19	□□□□□ -0.3	not detected
DED1	YOR204W	RPL8A	P17076	256 aa	Known RBP	13.19	□□□□□ -0.3
DED1	YOR204W	MAK11	P20484	414 aa	Known RBP	13.19	□□□□□ -0.3
DED1	YOR204W	LSB1	P53281	241 aa		13.19	□□□□□ -0.3
DED1	YOR204W	HAP5	Q02516	242 aa		13.19	□□□□□ -0.3
DED1	YOR204W	PTC5	Q12511	572 aa		13.19	□□□□□ -0.3
DED1	YOR204W	PGI1	P12709	554 aa	Known RBP	13.18	□□□□□ -0.3
DED1	YOR204W	CCT3	P39077	534 aa	Known RBP	13.18	□□□□□ -0.3
DED1	YOR204W	FMS1	P50264	508 aa		13.18	□□□□□ -0.3

Retrieved 100 of 5,963 RNA–protein pairs in 34.4 ms