RNA–Protein interactions for RNA: YKL196C

YKT6, Transcript of Vesicle membrane protein (v-SNARE) with acyltransferase activity, yeast

Gene YKT6, Length 603 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YKT6	YKL196C	UGA4	P32837	571 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	OMA1	P36163	345 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	STM1	P39015	273 aa	Known RBP	4.88	□□□□□ -1.63
YKT6	YKL196C	THI12	P42883	340 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	THI5	P43534	340 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	THI11	P47183	340 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	SAM37	P50110	327 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	PMT7	Q06644	662 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	THI13	Q07748	340 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	ALG6	Q12001	544 aa	Known RBP	4.88	□□□□□ -1.63
YKT6	YKL196C	TY1A-GR1	Q12085	440 aa		4.88	□□□□□ -1.63
YKT6	YKL196C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.88	□□□□□ -1.63
YKT6	YKL196C	TY1A-OL	Q92392	440 aa	Known RBP	4.88	□□□□□ -1.63
YKT6	YKL196C	MAC1	P35192	417 aa		4.87	□□□□□ -1.63
YKT6	YKL196C	GPT2	P36148	743 aa		4.87	□□□□□ -1.63
YKT6	YKL196C	PPX1	P38698	397 aa		4.87	□□□□□ -1.63
YKT6	YKL196C	INP52	P50942	1183 aa		4.87	□□□□□ -1.63
YKT6	YKL196C	UTP22	P53254	1237 aa	Predicted RBP	4.87	□□□□□ -1.63
YKT6	YKL196C	YOR223W	Q12015	292 aa		4.87	□□□□□ -1.63
YKT6	YKL196C	CHS2	P14180	963 aa		4.86	□□□□□ -1.63
YKT6	YKL196C	DAK2	P43550	591 aa		4.86	□□□□□ -1.63
YKT6	YKL196C	GCV1	P48015	400 aa		4.86	□□□□□ -1.63
YKT6	YKL196C	SEN54	Q02825	467 aa	Predicted RBP	4.86	□□□□□ -1.63
YKT6	YKL196C	DOT1	Q04089	582 aa	Known RBP	4.86	□□□□□ -1.63
YKT6	YKL196C	YCS4	Q06156	1176 aa		4.86	□□□□□ -1.63
YKT6	YKL196C	GIC2	Q06648	383 aa		4.86	□□□□□ -1.63
YKT6	YKL196C	CIC1	P38779	376 aa	Known RBP	4.85	□□□□□ -1.63
YKT6	YKL196C	RVS167	P39743	482 aa	Known RBP	4.85	□□□□□ -1.63
YKT6	YKL196C	MEC3	Q02574	474 aa		4.85	□□□□□ -1.63
YKT6	YKL196C	MED7	Q08278	222 aa		4.85	□□□□□ -1.63
YKT6	YKL196C	PRP40	P33203	583 aa	Known RBP	4.84	□□□□□ -1.63
YKT6	YKL196C	TOS1	P38288	455 aa		4.84	□□□□□ -1.63
YKT6	YKL196C	EXO5	P38289	585 aa		4.84	□□□□□ -1.63
YKT6	YKL196C	REI1	P38344	393 aa	Predicted RBP	4.84	□□□□□ -1.63
YKT6	YKL196C	SLS1	P42900	643 aa		4.84	□□□□□ -1.63
YKT6	YKL196C	DAL4	Q04895	635 aa		4.84	□□□□□ -1.63
YKT6	YKL196C	CYC7	P00045	113 aa		4.83	□□□□□ -1.64
YKT6	YKL196C	VPS35	P34110	944 aa		4.83	□□□□□ -1.64
YKT6	YKL196C	WHI3	P34761	661 aa	Known RBP	4.83	□□□□□ -1.64
YKT6	YKL196C	CTH1	P47976	325 aa		4.83	□□□□□ -1.64
YKT6	YKL196C	GCD6	P32501	712 aa	Known RBP	4.82	□□□□□ -1.64
YKT6	YKL196C	SEA4	P38164	1038 aa		4.82	□□□□□ -1.64
YKT6	YKL196C	NEM1	P38757	446 aa		4.82	□□□□□ -1.64
YKT6	YKL196C	SPO74	P45819	413 aa		4.82	□□□□□ -1.64
YKT6	YKL196C	EAR1	Q03212	550 aa		4.82	□□□□□ -1.64
YKT6	YKL196C	YML020W	Q03722	664 aa		4.82	□□□□□ -1.64
YKT6	YKL196C	YLL054C	Q12244	843 aa		4.82	□□□□□ -1.64
YKT6	YKL196C	GCD1	P09032	578 aa	Predicted RBP	4.81	□□□□□ -1.64
YKT6	YKL196C	MSB1	P21339	1137 aa	Known RBP	4.81	□□□□□ -1.64
YKT6	YKL196C	RPT1	P33299	467 aa	Known RBP	4.81	□□□□□ -1.64
YKT6	YKL196C	FAA3	P39002	694 aa		4.81	□□□□□ -1.64
YKT6	YKL196C	MSH4	P40965	878 aa	Predicted RBP	4.81	□□□□□ -1.64
YKT6	YKL196C	YGR045C	P53229	120 aa		4.81	□□□□□ -1.64
YKT6	YKL196C	ELA1	P53861	379 aa	Predicted RBP	4.81	□□□□□ -1.64
YKT6	YKL196C	PEX13	P80667	386 aa		4.81	□□□□□ -1.64
YKT6	YKL196C	SDH1	Q00711	640 aa		4.81	□□□□□ -1.64
YKT6	YKL196C	ULP1	Q02724	621 aa		4.81	□□□□□ -1.64
YKT6	YKL196C	SEC20	P28791	383 aa		4.8	□□□□□ -1.64
YKT6	YKL196C	LIP5	P32875	414 aa		4.8	□□□□□ -1.64
YKT6	YKL196C	YKL077W	P36081	392 aa		4.8	□□□□□ -1.64
YKT6	YKL196C	NOG1	Q02892	647 aa	Known RBP	4.8	□□□□□ -1.64
YKT6	YKL196C	RPS4A	P0CX35	261 aa	Known RBP	4.79	□□□□□ -1.64
YKT6	YKL196C	RPS4B	P0CX36	261 aa	Known RBP	4.79	□□□□□ -1.64
YKT6	YKL196C	MSH3	P25336	1018 aa		4.79	□□□□□ -1.64
YKT6	YKL196C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
YKT6	YKL196C	MMM1	P41800	426 aa		4.79	□□□□□ -1.64
YKT6	YKL196C	MAG2	Q06436	670 aa	Known RBP	4.79	□□□□□ -1.64
YKT6	YKL196C	BRE4	Q07660	1125 aa		4.79	□□□□□ -1.64
YKT6	YKL196C	RSM26	P47141	266 aa		4.78	□□□□□ -1.64
YKT6	YKL196C	AVO1	Q08236	1176 aa		4.78	□□□□□ -1.64
YKT6	YKL196C	HXK1	P04806	485 aa	Known RBP	4.77	□□□□□ -1.65
YKT6	YKL196C	NFS1	P25374	497 aa		4.77	□□□□□ -1.65
YKT6	YKL196C	PEX28	P38848	579 aa		4.77	□□□□□ -1.65
YKT6	YKL196C	NMD3	P38861	518 aa	Known RBP	4.77	□□□□□ -1.65
YKT6	YKL196C	SHU2	P38957	223 aa		4.77	□□□□□ -1.65
YKT6	YKL196C	ALT1	P52893	592 aa		4.77	□□□□□ -1.65
YKT6	YKL196C	YRB30	P53107	440 aa	Predicted RBP	4.77	□□□□□ -1.65
YKT6	YKL196C	YPL109C	Q02981	657 aa		4.77	□□□□□ -1.65
YKT6	YKL196C	UTP5	Q04177	643 aa	Known RBP	4.77	□□□□□ -1.65
YKT6	YKL196C	OXR1	Q08952	273 aa		4.77	□□□□□ -1.65
YKT6	YKL196C	HEM13	P11353	328 aa	Known RBP	4.76	□□□□□ -1.65
YKT6	YKL196C	KAR2	P16474	682 aa	Known RBP	4.76	□□□□□ -1.65
YKT6	YKL196C	ATE1	P16639	503 aa		4.76	□□□□□ -1.65
YKT6	YKL196C	SQT1	P35184	431 aa		4.76	□□□□□ -1.65
YKT6	YKL196C	ARL1	P38116	183 aa	Known RBP	4.76	□□□□□ -1.65
YKT6	YKL196C	PIC2	P40035	300 aa		4.76	□□□□□ -1.65
YKT6	YKL196C	CIT3	P43635	486 aa		4.76	□□□□□ -1.65
YKT6	YKL196C	RCM1	P53972	490 aa		4.76	□□□□□ -1.65
YKT6	YKL196C	NOP8	Q08287	484 aa	Predicted RBP	4.76	□□□□□ -1.65
YKT6	YKL196C	AIM44	Q99299	758 aa		4.76	□□□□□ -1.65
YKT6	YKL196C	MCM2	P29469	868 aa		4.75	□□□□□ -1.65
YKT6	YKL196C	SMY2	P32909	740 aa	Known RBP	4.75	□□□□□ -1.65
YKT6	YKL196C	XKS1	P42826	600 aa		4.75	□□□□□ -1.65
YKT6	YKL196C	MTR4	P47047	1073 aa	Known RBP	4.75	□□□□□ -1.65
YKT6	YKL196C	YNR063W	P53749	607 aa		4.75	□□□□□ -1.65
YKT6	YKL196C	ADI1	Q03677	179 aa		4.75	□□□□□ -1.65
YKT6	YKL196C	SLD2	P34252	453 aa		4.74	□□□□□ -1.65
YKT6	YKL196C	YAR028W	P39548	234 aa		4.74	□□□□□ -1.65
YKT6	YKL196C	OYE3	P41816	400 aa	Predicted RBP	4.74	□□□□□ -1.65
YKT6	YKL196C	YGL140C	P53120	1219 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 41.7 ms