RNA–Protein interactions for RNA: YKL027W

TCD2, Transcript of tRNA threonylcarbamoyladenosine dehydratase, yeast

Gene TCD2, Length 1,344 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TCD2	YKL027W	NUC1	P08466	329 aa		13.41	□□□□□ -0.26
TCD2	YKL027W	RPL19A	P0CX82	189 aa	Known RBP	13.41	□□□□□ -0.26
TCD2	YKL027W	RPL19B	P0CX83	189 aa	Predicted RBP	13.41	□□□□□ -0.26
TCD2	YKL027W	RNR3	P21672	869 aa	Known RBP	13.41	□□□□□ -0.26
TCD2	YKL027W	ETP1	P38748	585 aa	Known RBP	13.41	□□□□□ -0.26
TCD2	YKL027W	LYS14	P40971	790 aa		13.41	□□□□□ -0.26
TCD2	YKL027W	SOL4	P53315	255 aa		13.41	□□□□□ -0.26
TCD2	YKL027W	PEX29	Q03370	554 aa		13.41	□□□□□ -0.26
TCD2	YKL027W	ISW2	Q08773	1120 aa		13.41	□□□□□ -0.26
TCD2	YKL027W	AKR1	P39010	764 aa		13.4	□□□□□ -0.26
TCD2	YKL027W	UBP9	P39967	754 aa		13.4	□□□□□ -0.26
TCD2	YKL027W	YOR111W	Q99210	232 aa		13.4	□□□□□ -0.26
TCD2	YKL027W	KRS1	P15180	591 aa	Known RBP	13.39	□□□□□ -0.27
TCD2	YKL027W	SAM2	P19358	384 aa	Known RBP	13.39	□□□□□ -0.27
TCD2	YKL027W	BMH2	P34730	273 aa	Known RBP	13.39	□□□□□ -0.27
TCD2	YKL027W	VPS45	P38932	577 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	VAB2	P40003	282 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	VPS20	Q04272	221 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	CST9	Q06032	482 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	TOM1	Q03280	3268 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	PER1	P25625	357 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	SPB4	P25808	606 aa	Predicted RBP	13.39	□□□□□ -0.27
TCD2	YKL027W	SEC20	P28791	383 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	TTI1	P36097	1038 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	TOM71	P38825	639 aa	Known RBP	13.39	□□□□□ -0.27
TCD2	YKL027W	NET1	P47035	1189 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	CTF18	P49956	741 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	RBA50	Q04418	439 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	YLR407W	Q06070	228 aa		13.39	□□□□□ -0.27
TCD2	YKL027W	BUD6	P41697	788 aa		13.38	□□□□□ -0.27
TCD2	YKL027W	EPL1	P43572	832 aa		13.38	□□□□□ -0.27
TCD2	YKL027W	MDM1	Q01846	1127 aa		13.38	□□□□□ -0.27
TCD2	YKL027W	FBP1	P09201	348 aa		13.37	□□□□□ -0.27
TCD2	YKL027W	SRP54	P20424	541 aa	Known RBP	13.37	□□□□□ -0.27
TCD2	YKL027W	NPA3	P47122	385 aa		13.37	□□□□□ -0.27
TCD2	YKL027W	YML037C	Q03703	340 aa		13.37	□□□□□ -0.27
TCD2	YKL027W	DSE3	Q08729	430 aa		13.37	□□□□□ -0.27
TCD2	YKL027W	CBP3	P21560	335 aa		13.36	□□□□□ -0.27
TCD2	YKL027W	MCD4	P36051	919 aa		13.36	□□□□□ -0.27
TCD2	YKL027W	RSC30	P38781	883 aa		13.36	□□□□□ -0.27
TCD2	YKL027W	LSB1	P53281	241 aa		13.36	□□□□□ -0.27
TCD2	YKL027W	GDE1	Q02979	1223 aa		13.36	□□□□□ -0.27
TCD2	YKL027W	ELG1	Q12050	791 aa		13.36	□□□□□ -0.27
TCD2	YKL027W	YDJ1	P25491	409 aa	Known RBP	13.35	□□□□□ -0.27
TCD2	YKL027W	APE3	P37302	537 aa	Known RBP	13.35	□□□□□ -0.27
TCD2	YKL027W	YJL007C	P47080	104 aa		13.35	□□□□□ -0.27
TCD2	YKL027W	YDR341C	Q05506	607 aa	Known RBP	13.35	□□□□□ -0.27
TCD2	YKL027W	TIF6	Q12522	245 aa	Known RBP	13.35	□□□□□ -0.27
TCD2	YKL027W	HCA4	P20448	770 aa	Known RBP	13.34	□□□□□ -0.27
TCD2	YKL027W	DIT2	P21595	489 aa		13.34	□□□□□ -0.27
TCD2	YKL027W	SWI4	P25302	1093 aa	Known RBP	13.34	□□□□□ -0.27
TCD2	YKL027W	RXT2	P38255	430 aa		13.34	□□□□□ -0.27
TCD2	YKL027W	RPN10	P38886	268 aa	Known RBP	13.34	□□□□□ -0.27
TCD2	YKL027W	JIP4	Q03361	876 aa		13.34	□□□□□ -0.27
TCD2	YKL027W	YPL150W	Q12152	901 aa		13.34	□□□□□ -0.27
TCD2	YKL027W	LSP1	Q12230	341 aa	Known RBP	13.34	□□□□□ -0.27
TCD2	YKL027W	MYO1	P08964	1928 aa		13.33	□□□□□ -0.28
TCD2	YKL027W	CIT1	P00890	479 aa		13.33	□□□□□ -0.28
TCD2	YKL027W	TPM2	P40414	161 aa		13.33	□□□□□ -0.28
TCD2	YKL027W	UBX5	Q06682	500 aa		13.33	□□□□□ -0.28
TCD2	YKL027W	BIK1	P11709	440 aa		13.32	□□□□□ -0.28
TCD2	YKL027W	ENT3	P47160	408 aa		13.32	□□□□□ -0.28
TCD2	YKL027W	UTP4	Q06679	776 aa	Known RBP	13.32	□□□□□ -0.28
TCD2	YKL027W	CFT2	Q12102	859 aa	Predicted RBP	13.32	□□□□□ -0.28
TCD2	YKL027W	MET6	P05694	767 aa	Known RBP	13.31	□□□□□ -0.28
TCD2	YKL027W	RAD18	P10862	487 aa		13.31	□□□□□ -0.28
TCD2	YKL027W	ASF1	P32447	279 aa		13.31	□□□□□ -0.28
TCD2	YKL027W	MOT2	P34909	587 aa	Known RBP	13.31	□□□□□ -0.28
TCD2	YKL027W	PCI8	P40512	444 aa		13.31	□□□□□ -0.28
TCD2	YKL027W	PEX14	P53112	341 aa		13.31	□□□□□ -0.28
TCD2	YKL027W	VIP1	Q06685	1146 aa	Known RBP	13.31	□□□□□ -0.28
TCD2	YKL027W	CPA2	P03965	1118 aa	Known RBP	13.3	□□□□□ -0.28
TCD2	YKL027W	RPL8A	P17076	256 aa	Known RBP	13.3	□□□□□ -0.28
TCD2	YKL027W	PRX1	P34227	261 aa	Known RBP	13.3	□□□□□ -0.28
TCD2	YKL027W	PHO88	P38264	188 aa	Predicted RBP	13.3	□□□□□ -0.28
TCD2	YKL027W	CCT3	P39077	534 aa	Known RBP	13.3	□□□□□ -0.28
TCD2	YKL027W	SPR3	P41901	512 aa		13.3	□□□□□ -0.28
TCD2	YKL027W	CEX1	Q12453	761 aa		13.3	□□□□□ -0.28
TCD2	YKL027W	ASH1	P34233	588 aa		13.29	□□□□□ -0.28
TCD2	YKL027W	VPS24	P36095	224 aa	Known RBP	13.29	□□□□□ -0.28
TCD2	YKL027W	YKR018C	P36114	725 aa		13.29	□□□□□ -0.28
TCD2	YKL027W	YAF9	P53930	226 aa		13.29	□□□□□ -0.28
TCD2	YKL027W	ALD6	P54115	500 aa	Known RBP	13.29	□□□□□ -0.28
TCD2	YKL027W	HSP82	P02829	709 aa	Known RBP	13.28	□□□□□ -0.28
TCD2	YKL027W	RFC5	P38251	354 aa		13.28	□□□□□ -0.28
TCD2	YKL027W	ERG7	P38604	731 aa		13.28	□□□□□ -0.28
TCD2	YKL027W	YGL138C	P53122	345 aa		13.28	□□□□□ -0.28
TCD2	YKL027W	DUS1	P53759	423 aa	Known RBP	13.28	□□□□□ -0.28
TCD2	YKL027W	SUE1	Q06524	206 aa		13.28	□□□□□ -0.28
TCD2	YKL027W	SRF1	Q12516	437 aa		13.28	□□□□□ -0.28
TCD2	YKL027W	STI1	P15705	589 aa	Known RBP RIP-Chip data	13.27	□□□□□ -0.29	not detected
TCD2	YKL027W	VMA2	P16140	517 aa	Known RBP	13.27	□□□□□ -0.29
TCD2	YKL027W	MAK11	P20484	414 aa	Known RBP	13.27	□□□□□ -0.29
TCD2	YKL027W	PWP2	P25635	923 aa	Known RBP	13.27	□□□□□ -0.29
TCD2	YKL027W	CDC60	P26637	1090 aa	Known RBP	13.27	□□□□□ -0.29
TCD2	YKL027W	IXR1	P33417	597 aa		13.27	□□□□□ -0.29
TCD2	YKL027W	GPB2	P39717	880 aa		13.27	□□□□□ -0.29
TCD2	YKL027W	FAR11	P53917	953 aa		13.27	□□□□□ -0.29
TCD2	YKL027W	NAF1	P53919	492 aa	Known RBP	13.27	□□□□□ -0.29
TCD2	YKL027W	HRQ1	Q05549	1077 aa		13.27	□□□□□ -0.29

Retrieved 100 of 5,963 RNA–protein pairs in 21.7 ms