RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C UTP22P53254 1237 aaPredicted RBP3.79□□□□□ -1.8
PCF11YDR228C TY1A-LR4P0C2I8 440 aaKnown RBP3.78□□□□□ -1.8
PCF11YDR228C TY1A-DR6P0CX70 440 aa3.78□□□□□ -1.8
PCF11YDR228C TY1A-ER1P0CX71 440 aa3.78□□□□□ -1.8
PCF11YDR228C TY1A-LR2P0CX72 440 aa3.78□□□□□ -1.8
PCF11YDR228C TY1A-PLP0CX73 440 aa3.78□□□□□ -1.8
PCF11YDR228C TY1A-JR1P0CX74 440 aa3.78□□□□□ -1.8
PCF11YDR228C TY1A-LR3P0CX75 440 aa3.78□□□□□ -1.8
PCF11YDR228C TY1A-ML2P0CX76 440 aa3.78□□□□□ -1.8
PCF11YDR228C DOT1Q04089 582 aaKnown RBP3.78□□□□□ -1.8
PCF11YDR228C YMR074CQ04773 145 aa3.78□□□□□ -1.8
PCF11YDR228C NOC3Q07896 663 aaPredicted RBP3.78□□□□□ -1.8
PCF11YDR228C TY1A-GR1Q12085 440 aa3.78□□□□□ -1.8
PCF11YDR228C TY1A-PR3Q6Q5H1 440 aaKnown RBP3.78□□□□□ -1.8
PCF11YDR228C TY1A-OLQ92392 440 aaKnown RBP3.78□□□□□ -1.8
PCF11YDR228C SSF1P38789 453 aaPredicted RBP3.77□□□□□ -1.81
PCF11YDR228C MMM1P41800 426 aa3.77□□□□□ -1.81
PCF11YDR228C SAM37P50110 327 aa3.77□□□□□ -1.81
PCF11YDR228C NOG1Q02892 647 aaKnown RBP3.77□□□□□ -1.81
PCF11YDR228C GCD1P09032 578 aaPredicted RBP3.77□□□□□ -1.81
PCF11YDR228C LIP5P32875 414 aa3.77□□□□□ -1.81
PCF11YDR228C EXO5P38289 585 aa3.77□□□□□ -1.81
PCF11YDR228C ALT1P52893 592 aa3.77□□□□□ -1.81
PCF11YDR228C YCS4Q06156 1176 aa3.77□□□□□ -1.81
PCF11YDR228C PHO4P07270 312 aaKnown RBP3.76□□□□□ -1.81
PCF11YDR228C REI1P38344 393 aaPredicted RBP3.76□□□□□ -1.81
PCF11YDR228C YHL050CP38721 697 aa3.76□□□□□ -1.81
PCF11YDR228C YHR219WP38900 624 aa3.76□□□□□ -1.81
PCF11YDR228C MSH4P40965 878 aaPredicted RBP3.76□□□□□ -1.81
PCF11YDR228C CIT3P43635 486 aa3.76□□□□□ -1.81
PCF11YDR228C YOR059CQ08448 450 aaKnown RBP3.76□□□□□ -1.81
PCF11YDR228C MCM5P29496 775 aaKnown RBP3.75□□□□□ -1.81
PCF11YDR228C ELM1P32801 640 aa3.75□□□□□ -1.81
PCF11YDR228C OYE3P41816 400 aaPredicted RBP3.75□□□□□ -1.81
PCF11YDR228C MET4P32389 672 aa3.75□□□□□ -1.81
PCF11YDR228C VPS35P34110 944 aa3.75□□□□□ -1.81
PCF11YDR228C PPX1P38698 397 aa3.75□□□□□ -1.81
PCF11YDR228C CIC1P38779 376 aaKnown RBP3.75□□□□□ -1.81
PCF11YDR228C IRC24P40580 263 aa3.75□□□□□ -1.81
PCF11YDR228C AVT1P47082 602 aa3.75□□□□□ -1.81
PCF11YDR228C MON1P53129 644 aa3.75□□□□□ -1.81
PCF11YDR228C YGR045CP53229 120 aa3.75□□□□□ -1.81
PCF11YDR228C RPS4AP0CX35 261 aaKnown RBP3.74□□□□□ -1.81
PCF11YDR228C RPS4BP0CX36 261 aaKnown RBP3.74□□□□□ -1.81
PCF11YDR228C WHI3P34761 661 aaKnown RBP3.74□□□□□ -1.81
PCF11YDR228C SDH1Q00711 640 aa3.74□□□□□ -1.81
PCF11YDR228C AOS1Q06624 347 aa3.74□□□□□ -1.81
PCF11YDR228C MSC6Q08818 692 aaKnown RBP3.74□□□□□ -1.81
PCF11YDR228C ALG6Q12001 544 aaKnown RBP3.74□□□□□ -1.81
PCF11YDR228C NEM1P38757 446 aa3.73□□□□□ -1.81
PCF11YDR228C STM1P39015 273 aaKnown RBP3.73□□□□□ -1.81
PCF11YDR228C RCM1P53972 490 aa3.73□□□□□ -1.81
PCF11YDR228C ORC3P54790 616 aa3.73□□□□□ -1.81
PCF11YDR228C EAR1Q03212 550 aa3.73□□□□□ -1.81
PCF11YDR228C GCD6P32501 712 aaKnown RBP3.73□□□□□ -1.81
PCF11YDR228C SMY2P32909 740 aaKnown RBP3.73□□□□□ -1.81
PCF11YDR228C SHU2P38957 223 aa3.73□□□□□ -1.81
PCF11YDR228C SLS1P42900 643 aa3.73□□□□□ -1.81
PCF11YDR228C YVC1Q12324 675 aa3.73□□□□□ -1.81
PCF11YDR228C PRP40P33203 583 aaKnown RBP3.72□□□□□ -1.81
PCF11YDR228C LRG1P35688 1017 aa3.72□□□□□ -1.81
PCF11YDR228C NNK1P36003 928 aa3.72□□□□□ -1.81
PCF11YDR228C YKL077WP36081 392 aa3.72□□□□□ -1.81
PCF11YDR228C PEX7P39108 375 aa3.72□□□□□ -1.81
PCF11YDR228C DAK2P43550 591 aa3.72□□□□□ -1.81
PCF11YDR228C TOS4Q06266 489 aa3.72□□□□□ -1.81
PCF11YDR228C RDH54P38086 958 aa3.71□□□□□ -1.82
PCF11YDR228C ELA1P53861 379 aaPredicted RBP3.71□□□□□ -1.82
PCF11YDR228C UTP5Q04177 643 aaKnown RBP3.71□□□□□ -1.82
PCF11YDR228C WHI5Q12416 295 aa3.71□□□□□ -1.82
PCF11YDR228C MSH3P25336 1018 aa3.71□□□□□ -1.82
PCF11YDR228C NFS1P25374 497 aa3.71□□□□□ -1.82
PCF11YDR228C UGA4P32837 571 aa3.71□□□□□ -1.82
PCF11YDR228C ULP1Q02724 621 aa3.71□□□□□ -1.82
PCF11YDR228C VMA4P22203 233 aaKnown RBP3.7□□□□□ -1.82
PCF11YDR228C ECL1P48235 211 aa3.7□□□□□ -1.82
PCF11YDR228C AVO1Q08236 1176 aa3.7□□□□□ -1.82
PCF11YDR228C SEG2P34250 1132 aa3.69□□□□□ -1.82
PCF11YDR228C TRE1Q08919 783 aa3.69□□□□□ -1.82
PCF11YDR228C LPX1Q12405 387 aaKnown RBP3.69□□□□□ -1.82
PCF11YDR228C NSI1Q12457 570 aa3.69□□□□□ -1.82
PCF11YDR228C DFG16Q99234 619 aa3.69□□□□□ -1.82
PCF11YDR228C HEM13P11353 328 aaKnown RBP3.69□□□□□ -1.82
PCF11YDR228C KAR2P16474 682 aaKnown RBP3.69□□□□□ -1.82
PCF11YDR228C YAR028WP39548 234 aa3.69□□□□□ -1.82
PCF11YDR228C SEN54Q02825 467 aaPredicted RBP3.69□□□□□ -1.82
PCF11YDR228C YPL109CQ02981 657 aa3.69□□□□□ -1.82
PCF11YDR228C DAL4Q04895 635 aa3.69□□□□□ -1.82
PCF11YDR228C PUS7Q08647 676 aaKnown RBP3.69□□□□□ -1.82
PCF11YDR228C HXK1P04806 485 aaKnown RBP3.68□□□□□ -1.82
PCF11YDR228C HSP78P33416 811 aa3.68□□□□□ -1.82
PCF11YDR228C TSA1P34760 196 aaKnown RBP3.68□□□□□ -1.82
PCF11YDR228C POL12P38121 705 aaPredicted RBP3.68□□□□□ -1.82
PCF11YDR228C NIT1P40447 199 aa3.68□□□□□ -1.82
PCF11YDR228C MTR4P47047 1073 aaKnown RBP3.68□□□□□ -1.82
PCF11YDR228C SAM35P14693 329 aa3.67□□□□□ -1.82
PCF11YDR228C RET1P22276 1149 aaKnown RBP3.67□□□□□ -1.82
PCF11YDR228C ADP1P25371 1049 aa3.67□□□□□ -1.82
PCF11YDR228C SEC20P28791 383 aa3.67□□□□□ -1.82
PCF11YDR228C PEX28P38848 579 aa3.67□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 78.1 ms