RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C KIN4Q01919 800 aa6.5□□□□□ -1.37
VPS1YKR001C PET111P08468 800 aa6.49□□□□□ -1.37
VPS1YKR001C DOS2P54858 310 aa6.49□□□□□ -1.37
VPS1YKR001C CFT2Q12102 859 aaPredicted RBP6.49□□□□□ -1.37
VPS1YKR001C TY1B-AO13527 1196 aaKnown RBP6.49□□□□□ -1.37
VPS1YKR001C RRT14P40470 206 aa6.49□□□□□ -1.37
VPS1YKR001C TY4A-JP47023 414 aa6.49□□□□□ -1.37
VPS1YKR001C GAS4Q08271 471 aa6.49□□□□□ -1.37
VPS1YKR001C MSH4P40965 878 aaPredicted RBP6.47□□□□□ -1.37
VPS1YKR001C LEM3P42838 414 aa6.47□□□□□ -1.37
VPS1YKR001C AAD16Q02895 342 aa6.47□□□□□ -1.37
VPS1YKR001C BRE1Q07457 700 aaKnown RBP6.47□□□□□ -1.37
VPS1YKR001C ISW2Q08773 1120 aa6.47□□□□□ -1.37
VPS1YKR001C RRP14P36080 434 aaKnown RBP6.47□□□□□ -1.37
VPS1YKR001C SSF1P38789 453 aaPredicted RBP6.47□□□□□ -1.37
VPS1YKR001C RTF1P53064 558 aa6.47□□□□□ -1.37
VPS1YKR001C RCF1Q03713 159 aa6.47□□□□□ -1.37
VPS1YKR001C RIX7Q07844 837 aaKnown RBP6.47□□□□□ -1.37
VPS1YKR001C CWH41P53008 833 aa6.46□□□□□ -1.37
VPS1YKR001C ECM16Q04217 1267 aaKnown RBP6.46□□□□□ -1.37
VPS1YKR001C NOP8Q08287 484 aaPredicted RBP6.46□□□□□ -1.37
VPS1YKR001C RAD2P07276 1031 aa6.46□□□□□ -1.38
VPS1YKR001C PDI1P17967 522 aaKnown RBP6.46□□□□□ -1.38
VPS1YKR001C OSM1P21375 501 aaKnown RBP6.46□□□□□ -1.38
VPS1YKR001C SCT1P32784 759 aa6.46□□□□□ -1.38
VPS1YKR001C SAP190P36123 1033 aa6.46□□□□□ -1.38
VPS1YKR001C FPK1P53739 893 aa6.46□□□□□ -1.38
VPS1YKR001C RAD51P25454 400 aa6.45□□□□□ -1.38
VPS1YKR001C DJP1P40564 432 aa6.45□□□□□ -1.38
VPS1YKR001C RPN7Q06103 429 aaKnown RBP6.45□□□□□ -1.38
VPS1YKR001C INP54Q08227 384 aaKnown RBP6.45□□□□□ -1.38
VPS1YKR001C TAN1P53072 289 aaPredicted RBP6.44□□□□□ -1.38
VPS1YKR001C PKH1Q03407 766 aa6.44□□□□□ -1.38
VPS1YKR001C YDR341CQ05506 607 aaKnown RBP6.44□□□□□ -1.38
VPS1YKR001C PSK2Q08217 1101 aa6.44□□□□□ -1.38
VPS1YKR001C YLL054CQ12244 843 aa6.44□□□□□ -1.38
VPS1YKR001C UTP10P42945 1769 aaKnown RBP6.44□□□□□ -1.38
VPS1YKR001C MSH3P25336 1018 aa6.44□□□□□ -1.38
VPS1YKR001C CBF5P33322 483 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
VPS1YKR001C LTV1P34078 463 aa6.44□□□□□ -1.38
VPS1YKR001C MEH1Q02205 184 aa6.43□□□□□ -1.38
VPS1YKR001C SUP35P05453 685 aaKnown RBP6.43□□□□□ -1.38
VPS1YKR001C SIC1P38634 284 aa6.43□□□□□ -1.38
VPS1YKR001C RSC8P43609 557 aaKnown RBP6.43□□□□□ -1.38
VPS1YKR001C AUS1Q08409 1394 aa6.43□□□□□ -1.38
VPS1YKR001C SPC42P36094 363 aa6.42□□□□□ -1.38
VPS1YKR001C AIM20P40451 204 aa6.42□□□□□ -1.38
VPS1YKR001C NYV1Q12255 253 aa6.42□□□□□ -1.38
VPS1YKR001C GAL11P19659 1081 aa6.41□□□□□ -1.38
VPS1YKR001C BYE1P36106 594 aa6.41□□□□□ -1.38
VPS1YKR001C YBP2P53169 641 aa6.41□□□□□ -1.38
VPS1YKR001C CLF1Q12309 687 aaPredicted RBP6.41□□□□□ -1.38
VPS1YKR001C PIM1P36775 1133 aa6.41□□□□□ -1.38
VPS1YKR001C FKH1P40466 484 aa6.41□□□□□ -1.38
VPS1YKR001C CEF1Q03654 590 aaPredicted RBP6.41□□□□□ -1.38
VPS1YKR001C GRX4P32642 244 aa6.4□□□□□ -1.38
VPS1YKR001C SLI15P38283 698 aa6.4□□□□□ -1.38
VPS1YKR001C GIR2Q03768 265 aaPredicted RBP6.4□□□□□ -1.38
VPS1YKR001C PFF1P38244 976 aa6.4□□□□□ -1.39
VPS1YKR001C TAF1P46677 1066 aa6.4□□□□□ -1.39
VPS1YKR001C VID30P53076 958 aa6.4□□□□□ -1.39
VPS1YKR001C DUS1P53759 423 aaKnown RBP6.4□□□□□ -1.39
VPS1YKR001C TAP42Q04372 366 aa6.4□□□□□ -1.39
VPS1YKR001C FAS2P19097 1887 aaKnown RBP6.39□□□□□ -1.39
VPS1YKR001C RPS9BP05755 195 aaKnown RBP6.39□□□□□ -1.39
VPS1YKR001C DEP1P31385 405 aa6.39□□□□□ -1.39
VPS1YKR001C IME2P32581 645 aa6.39□□□□□ -1.39
VPS1YKR001C GDE1Q02979 1223 aa6.39□□□□□ -1.39
VPS1YKR001C SEC27P41811 889 aaKnown RBP6.38□□□□□ -1.39
VPS1YKR001C PRP3Q03338 469 aaPredicted RBP6.38□□□□□ -1.39
VPS1YKR001C TUM1Q08686 304 aaKnown RBP6.38□□□□□ -1.39
VPS1YKR001C NUP145P49687 1317 aa6.38□□□□□ -1.39
VPS1YKR001C SMY1P32364 656 aaKnown RBP6.38□□□□□ -1.39
VPS1YKR001C CTI6Q08923 506 aa6.38□□□□□ -1.39
VPS1YKR001C VPS5Q92331 675 aa6.38□□□□□ -1.39
VPS1YKR001C POM152P39685 1337 aa6.37□□□□□ -1.39
VPS1YKR001C THS1P04801 734 aaKnown RBP6.37□□□□□ -1.39
VPS1YKR001C RET1P22276 1149 aaKnown RBP6.37□□□□□ -1.39
VPS1YKR001C NPR3P38742 1146 aa6.37□□□□□ -1.39
VPS1YKR001C ETP1P38748 585 aaKnown RBP6.37□□□□□ -1.39
VPS1YKR001C SYH1Q02875 849 aaKnown RBP6.37□□□□□ -1.39
VPS1YKR001C YLR257WQ06146 321 aaKnown RBP6.37□□□□□ -1.39
VPS1YKR001C NOP56Q12460 504 aaKnown RBP RIP-Chip data6.37□□□□□ -1.39not detected
VPS1YKR001C PMD1P32634 1753 aa6.37□□□□□ -1.39
VPS1YKR001C MPE1P35728 441 aaKnown RBP6.37□□□□□ -1.39
VPS1YKR001C OPY1P38271 328 aa6.37□□□□□ -1.39
VPS1YKR001C ATG20Q07528 640 aa6.37□□□□□ -1.39
VPS1YKR001C RPA135P22138 1203 aaKnown RBP6.35□□□□□ -1.39
VPS1YKR001C NMD3P38861 518 aaKnown RBP6.35□□□□□ -1.39
VPS1YKR001C HEL2Q05580 639 aaKnown RBP6.35□□□□□ -1.39
VPS1YKR001C GGA1Q06336 557 aa6.35□□□□□ -1.39
VPS1YKR001C RRP15Q06511 250 aaPredicted RBP6.35□□□□□ -1.39
VPS1YKR001C YLR278CQ05854 1341 aa6.35□□□□□ -1.39
VPS1YKR001C FIG2P25653 1609 aa6.35□□□□□ -1.39
VPS1YKR001C RPC82P32349 654 aa6.35□□□□□ -1.39
VPS1YKR001C RTG2P32608 588 aaKnown RBP6.35□□□□□ -1.39
VPS1YKR001C ERO1Q03103 563 aa6.35□□□□□ -1.39
VPS1YKR001C HIM1Q06674 414 aa6.35□□□□□ -1.39
VPS1YKR001C TY4B-PA0A0B7P3V8 1104 aa6.34□□□□□ -1.39
VPS1YKR001C SHC1P39000 512 aa6.34□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 50.4 ms