Protein–RNA interactions for Protein: P53064

RTF1, RNA polymerase-associated protein RTF1, yeastyeast

Predictions only

Length 558 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTF1P53064 YML009W-BYML009W-B 477 nt27.06■■□□□ 1.92
RTF1P53064 NSR1YGR159C 1245 nt26.62■■□□□ 1.85
RTF1P53064 NOP1YDL014W 984 nt26.44■■□□□ 1.82
RTF1P53064 YKL036CYKL036C 393 nt24.64■■□□□ 1.54
RTF1P53064 MDJ1YFL016C 1536 nt23.35■■□□□ 1.33
RTF1P53064 Q0297Q0297 156 nt23.2■■□□□ 1.3
RTF1P53064 YJL027CYJL027C 417 nt23.08■■□□□ 1.29
RTF1P53064 SRX1YKL086W 384 nt23.07■■□□□ 1.28
RTF1P53064 SCS3YGL126W 1143 nt22.55■■□□□ 1.2
RTF1P53064 YCR051WYCR051W 669 nt21.94■■□□□ 1.1
RTF1P53064 YOL085CYOL085C 342 nt21.32■■□□□ 1
RTF1P53064 PKP1YIL042C 1185 nt20.97■□□□□ 0.95
RTF1P53064 RPP1BYDL130W 321 nt20.83■□□□□ 0.93
RTF1P53064 DBP2YNL112W 1641 nt20.74■□□□□ 0.91
RTF1P53064 TRN1tP(UGG)A 72 nt20.68■□□□□ 0.9
RTF1P53064 SUF9tP(UGG)F 72 nt20.68■□□□□ 0.9
RTF1P53064 SUF8tP(UGG)H 72 nt20.68■□□□□ 0.9
RTF1P53064 tP(UGG)LtP(UGG)L 72 nt20.68■□□□□ 0.9
RTF1P53064 SUF7tP(UGG)M 72 nt20.68■□□□□ 0.9
RTF1P53064 tP(UGG)N1tP(UGG)N1 72 nt20.68■□□□□ 0.9
RTF1P53064 tP(UGG)N2tP(UGG)N2 72 nt20.68■□□□□ 0.9
RTF1P53064 tP(UGG)O1tP(UGG)O1 72 nt20.68■□□□□ 0.9
RTF1P53064 SUF11tP(UGG)O2 72 nt20.68■□□□□ 0.9
RTF1P53064 CCC1YLR220W 969 nt20.51■□□□□ 0.87
RTF1P53064 SCJ1YMR214W 1134 nt20.35■□□□□ 0.85
RTF1P53064 ATS1YAL020C 1002 nt20.25■□□□□ 0.83
RTF1P53064 PET122YER153C 765 nt19.86■□□□□ 0.77
RTF1P53064 YBR190WYBR190W 312 nt19.85■□□□□ 0.77
RTF1P53064 SCR1SCR1 522 nt19.77■□□□□ 0.76
RTF1P53064 tP(UGG)O3tP(UGG)O3 72 nt19.67■□□□□ 0.74
RTF1P53064 RVS167YDR388W 1449 nt19.66■□□□□ 0.74
RTF1P53064 RTC3YHR087W 336 nt19.46■□□□□ 0.71
RTF1P53064 RRN5YLR141W 1092 nt19.32■□□□□ 0.68
RTF1P53064 RSB1YOR049C 1065 nt19.04■□□□□ 0.64
RTF1P53064 YDJ1YNL064C 1230 nt19.03■□□□□ 0.64
RTF1P53064 SHR5YOL110W 714 nt19.01■□□□□ 0.63
RTF1P53064 YER088W-BYER088W-B 147 nt18.94■□□□□ 0.62
RTF1P53064 PST2YDR032C 597 nt18.7■□□□□ 0.58
RTF1P53064 GAR1YHR089C 618 nt18.57■□□□□ 0.56
RTF1P53064 DEP1YAL013W 1218 nt18.38■□□□□ 0.53
RTF1P53064 URN1YPR152C 1398 nt18.3■□□□□ 0.52
RTF1P53064 YKL097CYKL097C 411 nt18.15■□□□□ 0.5
RTF1P53064 RPN10YHR200W 807 nt18.14■□□□□ 0.49
RTF1P53064 YNL208WYNL208W 600 nt18.13■□□□□ 0.49
RTF1P53064 OPI9YLR338W 858 nt17.96■□□□□ 0.47
RTF1P53064 TIR1YER011W 765 nt17.92■□□□□ 0.46
RTF1P53064 SHU1YHL006C 453 nt17.87■□□□□ 0.45
RTF1P53064 SAH1YER043C 1350 nt17.77■□□□□ 0.43
RTF1P53064 PUT4YOR348C 1884 nt17.75■□□□□ 0.43
RTF1P53064 SSA1YAL005C 1929 nt17.62■□□□□ 0.41
RTF1P53064 ARE1YCR048W 1833 nt17.52■□□□□ 0.4
RTF1P53064 YAL037C-BYAL037C-B 975 nt17.52■□□□□ 0.4
RTF1P53064 YJR018WYJR018W 363 nt17.48■□□□□ 0.39
RTF1P53064 PUN1YLR414C 792 nt17.47■□□□□ 0.39
RTF1P53064 SRB2YHR041C 633 nt17.35■□□□□ 0.37
RTF1P53064 YHR049C-AYHR049C-A 297 nt17.34■□□□□ 0.37
RTF1P53064 YOR139CYOR139C 393 nt17.32■□□□□ 0.36
RTF1P53064 POA1YBR022W 534 nt17.26■□□□□ 0.35
RTF1P53064 RPP2BYDR382W 333 nt17.24■□□□□ 0.35
RTF1P53064 YJR120WYJR120W 351 nt17.21■□□□□ 0.35
RTF1P53064 YGR021WYGR021W 873 nt17.2■□□□□ 0.34
RTF1P53064 PTC2YER089C 1395 nt17.18■□□□□ 0.34
RTF1P53064 NPL3YDR432W 1245 nt17.18■□□□□ 0.34
RTF1P53064 WWM1YFL010C 636 nt17.18■□□□□ 0.34
RTF1P53064 HOM6YJR139C 1080 nt17.11■□□□□ 0.33
RTF1P53064 MNP1YGL068W 585 nt17.08■□□□□ 0.32
RTF1P53064 BUD23YCR047C 828 nt16.99■□□□□ 0.31
RTF1P53064 YOL037CYOL037C 354 nt16.94■□□□□ 0.3
RTF1P53064 YFL021C-AYFL021C-A 855 nt16.92■□□□□ 0.3
RTF1P53064 NAB2YGL122C 1578 nt16.92■□□□□ 0.3
RTF1P53064 BDH2YAL061W 1254 nt16.91■□□□□ 0.3
RTF1P53064 RKM5YLR137W 1104 nt16.87■□□□□ 0.29
RTF1P53064 INM2YDR287W 879 nt16.83■□□□□ 0.28
RTF1P53064 BSC6YOL137W 1494 nt16.82■□□□□ 0.28
RTF1P53064 SSA3YBL075C 1950 nt16.77■□□□□ 0.28
RTF1P53064 FPR4YLR449W 1179 nt16.77■□□□□ 0.28
RTF1P53064 DAL1YIR027C 1383 nt16.76■□□□□ 0.27
RTF1P53064 LSM3YLR438C-A 270 nt16.75■□□□□ 0.27
RTF1P53064 YBL100CYBL100C 315 nt16.71■□□□□ 0.27
RTF1P53064 FIS1YIL065C 468 nt16.68■□□□□ 0.26
RTF1P53064 tM(CAU)CtM(CAU)C 72 nt16.64■□□□□ 0.25
RTF1P53064 IMT4tM(CAU)E 72 nt16.64■□□□□ 0.25
RTF1P53064 IMT3tM(CAU)J3 72 nt16.64■□□□□ 0.25
RTF1P53064 IMT1tM(CAU)O1 72 nt16.64■□□□□ 0.25
RTF1P53064 IMT2tM(CAU)P 72 nt16.64■□□□□ 0.25
RTF1P53064 PHO4YFR034C 939 nt16.59■□□□□ 0.25
RTF1P53064 TRM9YML014W 840 nt16.56■□□□□ 0.24
RTF1P53064 FUN26YAL022C 1554 nt16.51■□□□□ 0.23
RTF1P53064 YLR281CYLR281C 468 nt16.49■□□□□ 0.23
RTF1P53064 PUS2YGL063W 1113 nt16.46■□□□□ 0.23
RTF1P53064 WHI5YOR083W 888 nt16.42■□□□□ 0.22
RTF1P53064 CCT6YDR188W 1641 nt16.34■□□□□ 0.21
RTF1P53064 ALF1YNL148C 765 nt16.26■□□□□ 0.19
RTF1P53064 SUF2tP(AGG)C 72 nt16.23■□□□□ 0.19
RTF1P53064 SUF10tP(AGG)N 72 nt16.23■□□□□ 0.19
RTF1P53064 YLR154C-GYLR154C-G 150 nt16.19■□□□□ 0.18
RTF1P53064 YPS1YLR120C 1710 nt16.14■□□□□ 0.17
RTF1P53064 DSK2YMR276W 1122 nt16.11■□□□□ 0.17
RTF1P53064 MOT3YMR070W 1473 nt16.1■□□□□ 0.17
RTF1P53064 YDR095CYDR095C 411 nt16.1■□□□□ 0.17
Retrieved 100 of 7,029 protein–RNA pairs in 15.3 ms