RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C MON2P48563 1636 aaPredicted RBP10.7□□□□□ -0.7
VPS1YKR001C INO80P53115 1489 aa10.61□□□□□ -0.71
VPS1YKR001C DNA2P38859 1522 aa10.13□□□□□ -0.79
VPS1YKR001C SWR1Q05471 1514 aa10.09□□□□□ -0.79
VPS1YKR001C KOG1P38873 1557 aa10□□□□□ -0.81
VPS1YKR001C TY1B-DR4Q07793 1604 aa9.95□□□□□ -0.82
VPS1YKR001C TCB3Q03640 1545 aaKnown RBP9.93□□□□□ -0.82
VPS1YKR001C RSE1Q04693 1361 aaKnown RBP9.81□□□□□ -0.84
VPS1YKR001C SGS1P35187 1447 aa9.59□□□□□ -0.87
VPS1YKR001C HSL1P34244 1518 aa9.54□□□□□ -0.88
VPS1YKR001C SPT6P23615 1451 aaKnown RBP9.52□□□□□ -0.89
VPS1YKR001C SPA2P23201 1466 aaKnown RBP9.41□□□□□ -0.9
VPS1YKR001C ECM5Q03214 1411 aa9.35□□□□□ -0.91
VPS1YKR001C THO2P53552 1597 aaKnown RBP9.34□□□□□ -0.91
VPS1YKR001C HIR3P47171 1648 aa9.32□□□□□ -0.92
VPS1YKR001C BUD4P47136 1447 aa9.29□□□□□ -0.92
VPS1YKR001C RQC2Q12532 1038 aaKnown RBP9.27□□□□□ -0.93
VPS1YKR001C MDS3P53094 1487 aa9.24□□□□□ -0.93
VPS1YKR001C MTC1P47018 478 aaKnown RBP9.22□□□□□ -0.93
VPS1YKR001C PEP1P32319 1579 aa9.13□□□□□ -0.95
VPS1YKR001C REV3P14284 1504 aa9.1□□□□□ -0.95
VPS1YKR001C XRN1P22147 1528 aaKnown RBP9.09□□□□□ -0.95
VPS1YKR001C ATG2P53855 1592 aa9.05□□□□□ -0.96
VPS1YKR001C BPT1P14772 1559 aa9.01□□□□□ -0.97
VPS1YKR001C SSK2P53599 1579 aa8.89□□□□□ -0.99
VPS1YKR001C YCF1P39109 1515 aaKnown RBP8.86□□□□□ -0.99
VPS1YKR001C SIN3P22579 1536 aa8.84□□□□□ -0.99
VPS1YKR001C BFR2Q06631 534 aaKnown RBP8.81□□□□□ -1
VPS1YKR001C SKI3P17883 1432 aaKnown RBP8.8□□□□□ -1
VPS1YKR001C TAF2P23255 1407 aa8.77□□□□□ -1.01
VPS1YKR001C SSN2P38931 1420 aa8.76□□□□□ -1.01
VPS1YKR001C ESP1Q03018 1630 aa8.74□□□□□ -1.01
VPS1YKR001C UFD4P33202 1483 aa8.68□□□□□ -1.02
VPS1YKR001C ESC1Q03661 1658 aaKnown RBP8.64□□□□□ -1.03
VPS1YKR001C MIF2P35201 549 aa8.63□□□□□ -1.03
VPS1YKR001C MYO2P19524 1574 aaKnown RBP8.63□□□□□ -1.03
VPS1YKR001C SCC2Q04002 1493 aa8.62□□□□□ -1.03
VPS1YKR001C CDC25P04821 1589 aa8.62□□□□□ -1.03
VPS1YKR001C MET5P47169 1442 aa8.61□□□□□ -1.03
VPS1YKR001C YPK9Q12697 1472 aa8.6□□□□□ -1.03
VPS1YKR001C DNF1P32660 1571 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-LR1P0C2J3 1770 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-FP0CX63 1770 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-GR2P0CX64 1770 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-CP25384 1770 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-DR2Q03494 1770 aa8.58□□□□□ -1.04
VPS1YKR001C TY1B-DR1Q03855 1755 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-DR3Q07791 1770 aaKnown RBP8.58□□□□□ -1.04
VPS1YKR001C TY2B-OR1Q12113 1770 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-DR1Q12472 1770 aa8.58□□□□□ -1.04
VPS1YKR001C TY2B-OR2Q12501 1770 aa8.58□□□□□ -1.04
VPS1YKR001C CHD1P32657 1468 aa8.57□□□□□ -1.04
VPS1YKR001C TY1B-BRQ12193 1756 aa8.57□□□□□ -1.04
VPS1YKR001C TY1B-GR3Q12316 1755 aa8.57□□□□□ -1.04
VPS1YKR001C TY1B-ORQ92393 1755 aa8.57□□□□□ -1.04
VPS1YKR001C RPO31P04051 1460 aa8.55□□□□□ -1.04
VPS1YKR001C LTE1P07866 1435 aa8.55□□□□□ -1.04
VPS1YKR001C RPA190P10964 1664 aaKnown RBP8.54□□□□□ -1.04
VPS1YKR001C RKR1Q04781 1562 aa8.54□□□□□ -1.04
VPS1YKR001C TAF7Q05021 590 aa8.53□□□□□ -1.04
VPS1YKR001C BNI1P41832 1953 aa8.52□□□□□ -1.05
VPS1YKR001C PAN1P32521 1480 aa8.49□□□□□ -1.05
VPS1YKR001C TY1B-HO13535 1793 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-DR5P0C2I2 1755 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-DR6P0C2I3 1755 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-LR2P0C2I5 1755 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-LR3P0C2I6 1755 aaKnown RBP8.46□□□□□ -1.06
VPS1YKR001C TY1B-PR1P0C2I9 1755 aaKnown RBP8.46□□□□□ -1.06
VPS1YKR001C TY1B-PR2P0C2J0 1756 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-PR3P0C2J1 1755 aaKnown RBP8.46□□□□□ -1.06
VPS1YKR001C TY1B-JR1P47098 1755 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-ML2Q03434 1755 aaKnown RBP8.46□□□□□ -1.06
VPS1YKR001C TY1B-ER1Q03612 1755 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-ML1Q04711 1755 aaKnown RBP8.46□□□□□ -1.06
VPS1YKR001C TY1B-GR2Q12269 1755 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-OLQ12273 1755 aa8.46□□□□□ -1.06
VPS1YKR001C TY1B-PLQ12414 1755 aaKnown RBP8.46□□□□□ -1.06
VPS1YKR001C TY2B-BQ12491 1770 aa8.46□□□□□ -1.06
VPS1YKR001C GEA2P39993 1459 aaKnown RBP8.44□□□□□ -1.06
VPS1YKR001C TY1B-DR3Q99231 1755 aa8.42□□□□□ -1.06
VPS1YKR001C DRS1P32892 752 aaKnown RBP8.4□□□□□ -1.06
VPS1YKR001C TOP2P06786 1428 aaKnown RBP8.38□□□□□ -1.07
VPS1YKR001C ITT1Q04638 464 aa8.36□□□□□ -1.07
VPS1YKR001C MMS22Q06164 1454 aa8.36□□□□□ -1.07
VPS1YKR001C YRF1-1P0CX20 1796 aa8.35□□□□□ -1.07
VPS1YKR001C YRF1-5P0CX21 1796 aa8.35□□□□□ -1.07
VPS1YKR001C YRF1-8P0CX22 1796 aa8.35□□□□□ -1.07
VPS1YKR001C TRM732Q03496 1420 aa8.33□□□□□ -1.08
VPS1YKR001C MMS1Q06211 1407 aa8.33□□□□□ -1.08
VPS1YKR001C IRC20Q06554 1556 aa8.33□□□□□ -1.08
VPS1YKR001C ABP1P15891 592 aaKnown RBP8.32□□□□□ -1.08
VPS1YKR001C YFR006WP43590 535 aa8.32□□□□□ -1.08
VPS1YKR001C NTE1Q04958 1679 aa8.28□□□□□ -1.08
VPS1YKR001C VPS15P22219 1454 aa8.28□□□□□ -1.08
VPS1YKR001C TY1B-JR2P47100 1755 aaKnown RBP8.27□□□□□ -1.08
VPS1YKR001C TY1B-ER2Q03619 1755 aa8.27□□□□□ -1.08
VPS1YKR001C TY1B-MR1Q04214 1755 aa8.27□□□□□ -1.08
VPS1YKR001C TY1B-MR2Q04670 1755 aaKnown RBP8.27□□□□□ -1.08
VPS1YKR001C TY1B-LR1Q12088 1755 aaKnown RBP8.27□□□□□ -1.08
VPS1YKR001C TY1B-NL1Q12112 1755 aa8.27□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms