RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W YDR306CQ06640 478 aa12.8□□□□□ -0.36
UBA4YHR111W SWI1P09547 1314 aa12.8□□□□□ -0.36
UBA4YHR111W CST6P40535 587 aa12.79□□□□□ -0.36
UBA4YHR111W FPK1P53739 893 aa12.79□□□□□ -0.36
UBA4YHR111W RPN1P38764 993 aaKnown RBP12.78□□□□□ -0.36
UBA4YHR111W MRP7P12687 371 aa12.77□□□□□ -0.37
UBA4YHR111W FRD1P32614 470 aaKnown RBP12.77□□□□□ -0.37
UBA4YHR111W YKU70P32807 602 aa12.77□□□□□ -0.37
UBA4YHR111W SAS4Q04003 481 aa12.77□□□□□ -0.37
UBA4YHR111W GRX6Q12438 231 aa12.77□□□□□ -0.37
UBA4YHR111W RPS9BP05755 195 aaKnown RBP12.76□□□□□ -0.37
UBA4YHR111W NUP133P36161 1157 aa12.76□□□□□ -0.37
UBA4YHR111W VPS27P40343 622 aaKnown RBP12.76□□□□□ -0.37
UBA4YHR111W YJR008WP47085 338 aa12.76□□□□□ -0.37
UBA4YHR111W FCP1Q03254 732 aa12.76□□□□□ -0.37
UBA4YHR111W SHC1P39000 512 aa12.75□□□□□ -0.37
UBA4YHR111W SLI15P38283 698 aa12.73□□□□□ -0.37
UBA4YHR111W ATG20Q07528 640 aa12.73□□□□□ -0.37
UBA4YHR111W CDC45Q08032 650 aa12.71□□□□□ -0.37
UBA4YHR111W SET1P38827 1080 aaKnown RBP12.7□□□□□ -0.38
UBA4YHR111W YGR122WP53272 402 aa12.7□□□□□ -0.38
UBA4YHR111W RET1P22276 1149 aaKnown RBP12.69□□□□□ -0.38
UBA4YHR111W ITC1P53125 1264 aa12.69□□□□□ -0.38
UBA4YHR111W DIP2Q12220 943 aaPredicted RBP12.69□□□□□ -0.38
UBA4YHR111W SSA4P22202 642 aaKnown RBP12.68□□□□□ -0.38
UBA4YHR111W PEX21P50091 288 aa12.68□□□□□ -0.38
UBA4YHR111W PUS5Q06244 254 aa12.67□□□□□ -0.38
UBA4YHR111W NOP8Q08287 484 aaPredicted RBP12.67□□□□□ -0.38
UBA4YHR111W SWC3P31376 625 aa12.66□□□□□ -0.38
UBA4YHR111W RAD24P32641 659 aa12.66□□□□□ -0.38
UBA4YHR111W DPL1Q05567 589 aa12.66□□□□□ -0.38
UBA4YHR111W ISW2Q08773 1120 aa12.66□□□□□ -0.38
UBA4YHR111W PSH1Q12161 406 aa12.66□□□□□ -0.38
UBA4YHR111W MAK21Q12176 1025 aaKnown RBP12.66□□□□□ -0.38
UBA4YHR111W DPH6Q12429 685 aa12.66□□□□□ -0.38
UBA4YHR111W RVB2Q12464 471 aaKnown RBP12.66□□□□□ -0.38
UBA4YHR111W THS1P04801 734 aaKnown RBP12.65□□□□□ -0.38
UBA4YHR111W YPP1P46951 817 aa12.65□□□□□ -0.38
UBA4YHR111W SAC3P46674 1301 aa12.65□□□□□ -0.38
UBA4YHR111W NSR1P27476 414 aaKnown RBP RIP-Chip data12.64□□□□□ -0.39not detected
UBA4YHR111W ICP55P40051 511 aa12.64□□□□□ -0.39
UBA4YHR111W FAS2P19097 1887 aaKnown RBP12.64□□□□□ -0.39
UBA4YHR111W MSM1P22438 575 aa12.62□□□□□ -0.39
UBA4YHR111W KRE2P27809 442 aa12.62□□□□□ -0.39
UBA4YHR111W UBP12P39538 1254 aa12.62□□□□□ -0.39
UBA4YHR111W SET4P42948 560 aa12.62□□□□□ -0.39
UBA4YHR111W MTC5Q03897 1148 aa12.62□□□□□ -0.39
UBA4YHR111W YLR278CQ05854 1341 aa12.62□□□□□ -0.39
UBA4YHR111W HKR1P41809 1802 aa12.62□□□□□ -0.39
UBA4YHR111W TRP5P00931 707 aaKnown RBP12.62□□□□□ -0.39
UBA4YHR111W RTG2P32608 588 aaKnown RBP12.62□□□□□ -0.39
UBA4YHR111W CSI1Q04368 295 aa12.62□□□□□ -0.39
UBA4YHR111W NGR1P32831 672 aaKnown RBP12.61□□□□□ -0.39
UBA4YHR111W MGM1P32266 881 aa12.6□□□□□ -0.39
UBA4YHR111W TIF4632P39936 914 aaKnown RBP12.6□□□□□ -0.39
UBA4YHR111W BOI2P39969 1040 aa12.6□□□□□ -0.39
UBA4YHR111W YRB30P53107 440 aaPredicted RBP12.6□□□□□ -0.39
UBA4YHR111W RPT4P53549 437 aaKnown RBP12.6□□□□□ -0.39
UBA4YHR111W UBX2Q04228 584 aa12.6□□□□□ -0.39
UBA4YHR111W THI3Q07471 609 aa12.6□□□□□ -0.39
UBA4YHR111W SUP35P05453 685 aaKnown RBP12.59□□□□□ -0.39
UBA4YHR111W GAP1P19145 602 aaPredicted RBP12.59□□□□□ -0.39
UBA4YHR111W SPL2P38839 148 aa12.59□□□□□ -0.39
UBA4YHR111W HXT10P43581 546 aa12.59□□□□□ -0.39
UBA4YHR111W NAB6Q03735 1134 aaKnown RBP RIP-Chip data12.59□□□□□ -0.39not detected
UBA4YHR111W RRD1P40454 393 aaKnown RBP12.58□□□□□ -0.4
UBA4YHR111W GAS5Q08193 484 aa12.58□□□□□ -0.4
UBA4YHR111W RPS19AP07280 144 aaKnown RBP12.57□□□□□ -0.4
UBA4YHR111W RPS19BP07281 144 aaPredicted RBP12.57□□□□□ -0.4
UBA4YHR111W DAL5P15365 543 aa12.57□□□□□ -0.4
UBA4YHR111W GLC3P32775 704 aa12.57□□□□□ -0.4
UBA4YHR111W FET4P40988 552 aa12.57□□□□□ -0.4
UBA4YHR111W YIL092WP40497 633 aa12.56□□□□□ -0.4
UBA4YHR111W TIM50Q02776 476 aa12.56□□□□□ -0.4
UBA4YHR111W RRG1Q12167 365 aaPredicted RBP12.56□□□□□ -0.4
UBA4YHR111W SNU66Q12420 587 aaPredicted RBP12.56□□□□□ -0.4
UBA4YHR111W TRM44Q02648 567 aaKnown RBP12.55□□□□□ -0.4
UBA4YHR111W SRC1Q03707 834 aa12.55□□□□□ -0.4
UBA4YHR111W AFG2P32794 780 aa12.54□□□□□ -0.4
UBA4YHR111W AIM7Q12156 149 aa12.54□□□□□ -0.4
UBA4YHR111W FIG2P25653 1609 aa12.53□□□□□ -0.4
UBA4YHR111W PRS1P32895 427 aaKnown RBP12.53□□□□□ -0.4
UBA4YHR111W VHR2P40041 505 aa12.52□□□□□ -0.41
UBA4YHR111W GSM1P42950 618 aa12.52□□□□□ -0.41
UBA4YHR111W VPS4P52917 437 aa12.51□□□□□ -0.41
UBA4YHR111W IRC4Q03036 179 aa12.51□□□□□ -0.41
UBA4YHR111W CRF1Q04930 467 aa12.51□□□□□ -0.41
UBA4YHR111W ADR1P07248 1323 aa12.5□□□□□ -0.41
UBA4YHR111W RAD2P07276 1031 aa12.5□□□□□ -0.41
UBA4YHR111W LCB1P25045 558 aaKnown RBP12.5□□□□□ -0.41
UBA4YHR111W YGR117CP53270 476 aa12.5□□□□□ -0.41
UBA4YHR111W PRP42Q03776 544 aaKnown RBP12.5□□□□□ -0.41
UBA4YHR111W STV1P37296 890 aa12.49□□□□□ -0.41
UBA4YHR111W TOS4Q06266 489 aa12.49□□□□□ -0.41
UBA4YHR111W NUG1P40010 520 aaKnown RBP12.48□□□□□ -0.41
UBA4YHR111W EMP47P43555 445 aa12.48□□□□□ -0.41
UBA4YHR111W HPR1P17629 752 aaKnown RBP12.47□□□□□ -0.41
UBA4YHR111W YNG2P38806 282 aaKnown RBP12.47□□□□□ -0.41
UBA4YHR111W FLO11P08640 1367 aa12.47□□□□□ -0.41
UBA4YHR111W POM152P39685 1337 aa12.45□□□□□ -0.42
Retrieved 100 of 5,963 RNA–protein pairs in 56.4 ms