RNA–Protein interactions for RNA: YOR339C

UBC11, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC11, Length 471 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC11	YOR339C	BNA2	P47125	453 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	PEF1	P53238	335 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	GIM3	P53900	129 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	YNL046W	P53956	172 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	YML018C	Q03730	393 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	GRC3	Q07845	632 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	NHP6B	P11633	99 aa	Known RBP	4.92	□□□□□ -1.62
UBC11	YOR339C	OCH1	P31755	480 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	YBR197C	P38306	217 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	PRS2	P38620	318 aa	Known RBP	4.92	□□□□□ -1.62
UBC11	YOR339C	SLM1	P40485	686 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	YJR011C	P47086	261 aa	Predicted RBP	4.92	□□□□□ -1.62
UBC11	YOR339C	DIE2	P50076	525 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	ALG9	P53868	555 aa	Known RBP	4.92	□□□□□ -1.62
UBC11	YOR339C	MRPL13	Q02204	264 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	YPL067C	Q02754	198 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	CAC2	Q04199	468 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	UPS1	Q05776	175 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	SYM1	Q06563	197 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	SNA4	Q07549	140 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	FRE8	Q12209	686 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	WHI5	Q12416	295 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	YOR192C-C	Q3E736	78 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	ATG40	Q99325	256 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	PET20	Q99373	253 aa		4.92	□□□□□ -1.62
UBC11	YOR339C	URA3	P03962	267 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	DIT1	P21623	536 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	CPR4	P25334	318 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	VMA3	P25515	160 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	ACH1	P32316	526 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	PAN3	P36102	679 aa	Predicted RBP	4.91	□□□□□ -1.62
UBC11	YOR339C	FLO10	P36170	1169 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	YIL012W	P40551	113 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	RPS0B	P46654	252 aa	Known RBP	4.91	□□□□□ -1.62
UBC11	YOR339C	HNT2	P49775	206 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	SBH2	P52871	88 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	GPG1	P53130	126 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	OKP1	P53298	406 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	TEX1	P53851	422 aa	Known RBP	4.91	□□□□□ -1.62
UBC11	YOR339C	MRPS16	Q02608	121 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	NRG1	Q03125	231 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	VBA1	Q04301	562 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	GMC1	Q04399	608 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	SCM3	Q12334	223 aa		4.91	□□□□□ -1.62
UBC11	YOR339C	SEN2	P16658	377 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	BUD23	P25627	275 aa	Predicted RBP	4.9	□□□□□ -1.63
UBC11	YOR339C	PPQ1	P32945	549 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	RPB7	P34087	171 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	POP8	P38208	133 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	OSH7	P38755	437 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	AIM46	P38885	310 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	BOL3	P39724	118 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	LSM1	P47017	172 aa	Known RBP	4.9	□□□□□ -1.63
UBC11	YOR339C	SOL1	P50278	321 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	SLX9	P53251	210 aa	Predicted RBP	4.9	□□□□□ -1.63
UBC11	YOR339C	GTF1	P53260	183 aa	Predicted RBP	4.9	□□□□□ -1.63
UBC11	YOR339C	ISU1	Q03020	165 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	NGL2	Q03264	515 aa	Known RBP	4.9	□□□□□ -1.63
UBC11	YOR339C	FIT1	Q04433	528 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	LIP2	Q06005	328 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	YOL118C	Q08259	102 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	YOR029W	Q12243	111 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	MED4	Q12343	284 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	RTR2	Q12378	196 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	YCL048W-A	Q2V2Q2	79 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	YLR365W	Q7LIF2	110 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	YMR105W-A	Q8TGS8	64 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	UBA3	Q99344	299 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	Q0297	Q9ZZV8	51 aa		4.9	□□□□□ -1.63
UBC11	YOR339C	GAL1	P04385	528 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	CKA1	P15790	372 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	GRX2	P17695	143 aa	Known RBP	4.89	□□□□□ -1.63
UBC11	YOR339C	MRP17	P28778	131 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	SWD2	P36104	329 aa	Predicted RBP	4.89	□□□□□ -1.63
UBC11	YOR339C	NTC20	P38302	140 aa	Predicted RBP	4.89	□□□□□ -1.63
UBC11	YOR339C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
UBC11	YOR339C	YIR020C	P40575	100 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	NCA3	P46955	337 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	PIR5	P46999	287 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	HSK3	P69852	69 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	YDR286C	Q05530	114 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	SCP1	Q08873	200 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	RFM1	Q12192	310 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	VAM3	Q12241	283 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	TRM13	Q12383	476 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	BPH1	P25356	2167 aa		4.89	□□□□□ -1.63
UBC11	YOR339C	GCN3	P14741	305 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	FUS3	P16892	353 aa	Known RBP	4.88	□□□□□ -1.63
UBC11	YOR339C	SAR1	P20606	190 aa	Known RBP	4.88	□□□□□ -1.63
UBC11	YOR339C	MIR1	P23641	311 aa	Known RBP	4.88	□□□□□ -1.63
UBC11	YOR339C	YCR016W	P25617	290 aa	Known RBP	4.88	□□□□□ -1.63
UBC11	YOR339C	TRR1	P29509	319 aa	Known RBP	4.88	□□□□□ -1.63
UBC11	YOR339C	SOH1	P38633	127 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	COS8	P38723	381 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	YHL044W	P38727	235 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	UBP8	P50102	471 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	GEP7	P53171	287 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	INN1	P53901	409 aa		4.88	□□□□□ -1.63
UBC11	YOR339C	SMX3	P54999	86 aa	Predicted RBP	4.88	□□□□□ -1.63
UBC11	YOR339C	CAB5	Q03941	241 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 71.9 ms