Protein–RNA interactions for Protein: Q99325

ATG40, Autophagy-related protein 40, yeastyeast

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
ATG40Q99325 NSR1YGR159C 1245 nt17.27■□□□□ 0.36
ATG40Q99325 YML009W-BYML009W-B 477 nt17.16■□□□□ 0.34
ATG40Q99325 NOP1YDL014W 984 nt16.69■□□□□ 0.26
ATG40Q99325 MDJ1YFL016C 1536 nt15.42■□□□□ 0.06
ATG40Q99325 YKL036CYKL036C 393 nt15.18■□□□□ 0.02
ATG40Q99325 SRX1YKL086W 384 nt14.54□□□□□ -0.08
ATG40Q99325 Q0297Q0297 156 nt14.52□□□□□ -0.09
ATG40Q99325 YJL027CYJL027C 417 nt14.28□□□□□ -0.12
ATG40Q99325 YCR051WYCR051W 669 nt13.74□□□□□ -0.21
ATG40Q99325 SCS3YGL126W 1143 nt13.68□□□□□ -0.22
ATG40Q99325 DBP2YNL112W 1641 nt13.57□□□□□ -0.24
ATG40Q99325 YBR190WYBR190W 312 nt13.27□□□□□ -0.29
ATG40Q99325 TRN1tP(UGG)A 72 nt13.25□□□□□ -0.29
ATG40Q99325 SUF9tP(UGG)F 72 nt13.25□□□□□ -0.29
ATG40Q99325 SUF8tP(UGG)H 72 nt13.25□□□□□ -0.29
ATG40Q99325 tP(UGG)LtP(UGG)L 72 nt13.25□□□□□ -0.29
ATG40Q99325 SUF7tP(UGG)M 72 nt13.25□□□□□ -0.29
ATG40Q99325 tP(UGG)N1tP(UGG)N1 72 nt13.25□□□□□ -0.29
ATG40Q99325 tP(UGG)N2tP(UGG)N2 72 nt13.25□□□□□ -0.29
ATG40Q99325 tP(UGG)O1tP(UGG)O1 72 nt13.25□□□□□ -0.29
ATG40Q99325 SUF11tP(UGG)O2 72 nt13.25□□□□□ -0.29
ATG40Q99325 YOL085CYOL085C 342 nt13.13□□□□□ -0.31
ATG40Q99325 CCC1YLR220W 969 nt13.06□□□□□ -0.32
ATG40Q99325 RPP1BYDL130W 321 nt13.02□□□□□ -0.33
ATG40Q99325 RTC3YHR087W 336 nt12.93□□□□□ -0.34
ATG40Q99325 PKP1YIL042C 1185 nt12.9□□□□□ -0.34
ATG40Q99325 RVS167YDR388W 1449 nt12.81□□□□□ -0.36
ATG40Q99325 SCJ1YMR214W 1134 nt12.61□□□□□ -0.39
ATG40Q99325 tP(UGG)O3tP(UGG)O3 72 nt12.46□□□□□ -0.41
ATG40Q99325 PET122YER153C 765 nt12.42□□□□□ -0.42
ATG40Q99325 SCR1SCR1 522 nt12.3□□□□□ -0.44
ATG40Q99325 SHR5YOL110W 714 nt12.3□□□□□ -0.44
ATG40Q99325 SSA3YBL075C 1950 nt12.25□□□□□ -0.45
ATG40Q99325 ATS1YAL020C 1002 nt12.2□□□□□ -0.46
ATG40Q99325 PUT4YOR348C 1884 nt12.14□□□□□ -0.47
ATG40Q99325 YDJ1YNL064C 1230 nt12.11□□□□□ -0.47
ATG40Q99325 RRN5YLR141W 1092 nt12.04□□□□□ -0.48
ATG40Q99325 URN1YPR152C 1398 nt12.03□□□□□ -0.48
ATG40Q99325 OPI9YLR338W 858 nt11.93□□□□□ -0.5
ATG40Q99325 DEP1YAL013W 1218 nt11.92□□□□□ -0.5
ATG40Q99325 RPN10YHR200W 807 nt11.89□□□□□ -0.51
ATG40Q99325 ARE1YCR048W 1833 nt11.85□□□□□ -0.51
ATG40Q99325 SAH1YER043C 1350 nt11.84□□□□□ -0.51
ATG40Q99325 YER088W-BYER088W-B 147 nt11.81□□□□□ -0.52
ATG40Q99325 YNL208WYNL208W 600 nt11.81□□□□□ -0.52
ATG40Q99325 GAR1YHR089C 618 nt11.79□□□□□ -0.52
ATG40Q99325 RSB1YOR049C 1065 nt11.75□□□□□ -0.53
ATG40Q99325 POA1YBR022W 534 nt11.73□□□□□ -0.53
ATG40Q99325 YHR049C-AYHR049C-A 297 nt11.72□□□□□ -0.53
ATG40Q99325 PUN1YLR414C 792 nt11.61□□□□□ -0.55
ATG40Q99325 BSC6YOL137W 1494 nt11.53□□□□□ -0.56
ATG40Q99325 YJR018WYJR018W 363 nt11.48□□□□□ -0.57
ATG40Q99325 PTC2YER089C 1395 nt11.43□□□□□ -0.58
ATG40Q99325 TIR1YER011W 765 nt11.43□□□□□ -0.58
ATG40Q99325 BUD23YCR047C 828 nt11.42□□□□□ -0.58
ATG40Q99325 NAB2YGL122C 1578 nt11.34□□□□□ -0.59
ATG40Q99325 PST2YDR032C 597 nt11.32□□□□□ -0.6
ATG40Q99325 SSA1YAL005C 1929 nt11.29□□□□□ -0.6
ATG40Q99325 RPP2BYDR382W 333 nt11.25□□□□□ -0.61
ATG40Q99325 YJR120WYJR120W 351 nt11.21□□□□□ -0.61
ATG40Q99325 DAL1YIR027C 1383 nt11.16□□□□□ -0.62
ATG40Q99325 INM2YDR287W 879 nt11.14□□□□□ -0.63
ATG40Q99325 FIS1YIL065C 468 nt11.14□□□□□ -0.63
ATG40Q99325 FPR4YLR449W 1179 nt11.09□□□□□ -0.63
ATG40Q99325 SPT5YML010W 3192 nt11.08□□□□□ -0.64
ATG40Q99325 PHO4YFR034C 939 nt11.04□□□□□ -0.64
ATG40Q99325 SRB2YHR041C 633 nt11□□□□□ -0.65
ATG40Q99325 YBL100CYBL100C 315 nt10.97□□□□□ -0.65
ATG40Q99325 BDH2YAL061W 1254 nt10.96□□□□□ -0.65
ATG40Q99325 SSA4YER103W 1929 nt10.9□□□□□ -0.66
ATG40Q99325 SHU1YHL006C 453 nt10.88□□□□□ -0.67
ATG40Q99325 YPS1YLR120C 1710 nt10.88□□□□□ -0.67
ATG40Q99325 WWM1YFL010C 636 nt10.86□□□□□ -0.67
ATG40Q99325 MEP2YNL142W 1500 nt10.85□□□□□ -0.67
ATG40Q99325 YGR021WYGR021W 873 nt10.84□□□□□ -0.67
ATG40Q99325 FUN26YAL022C 1554 nt10.82□□□□□ -0.68
ATG40Q99325 LSM3YLR438C-A 270 nt10.82□□□□□ -0.68
ATG40Q99325 YDR095CYDR095C 411 nt10.81□□□□□ -0.68
ATG40Q99325 YKL097CYKL097C 411 nt10.8□□□□□ -0.68
ATG40Q99325 TRM9YML014W 840 nt10.79□□□□□ -0.68
ATG40Q99325 YHR165W-AYHR165W-A 312 nt10.78□□□□□ -0.68
ATG40Q99325 YFL021C-AYFL021C-A 855 nt10.76□□□□□ -0.69
ATG40Q99325 ALF1YNL148C 765 nt10.74□□□□□ -0.69
ATG40Q99325 HOM6YJR139C 1080 nt10.73□□□□□ -0.69
ATG40Q99325 YAL037C-BYAL037C-B 975 nt10.71□□□□□ -0.69
ATG40Q99325 CCT6YDR188W 1641 nt10.69□□□□□ -0.7
ATG40Q99325 SUF2tP(AGG)C 72 nt10.66□□□□□ -0.7
ATG40Q99325 SUF10tP(AGG)N 72 nt10.66□□□□□ -0.7
ATG40Q99325 DCW1YKL046C 1350 nt10.62□□□□□ -0.71
ATG40Q99325 MNP1YGL068W 585 nt10.6□□□□□ -0.71
ATG40Q99325 RPP2AYOL039W 321 nt10.6□□□□□ -0.71
ATG40Q99325 RKM5YLR137W 1104 nt10.58□□□□□ -0.72
ATG40Q99325 SIS1YNL007C 1059 nt10.56□□□□□ -0.72
ATG40Q99325 YMR090WYMR090W 684 nt10.54□□□□□ -0.72
ATG40Q99325 EMI2YDR516C 1503 nt10.53□□□□□ -0.72
ATG40Q99325 PTP1YDL230W 1008 nt10.53□□□□□ -0.72
ATG40Q99325 BDF1YLR399C 2061 nt10.48□□□□□ -0.73
ATG40Q99325 YDL221WYDL221W 552 nt10.47□□□□□ -0.73
ATG40Q99325 YOL037CYOL037C 354 nt10.46□□□□□ -0.73
ATG40Q99325 CAC2YML102W 1407 nt10.45□□□□□ -0.74
Retrieved 100 of 7,029 protein–RNA pairs in 13.8 ms