RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C DOG1P38774 246 aa1.94□□□□□ -2.1
RUB1YDR139C YNL046WP53956 172 aa1.94□□□□□ -2.1
RUB1YDR139C YLR173WQ06247 608 aa1.94□□□□□ -2.1
RUB1YDR139C YPL257WQ08974 193 aa1.94□□□□□ -2.1
RUB1YDR139C BOL1Q3E793 110 aa1.94□□□□□ -2.1
RUB1YDR139C FIS1P40515 155 aa1.93□□□□□ -2.1
RUB1YDR139C YJR079WP47126 109 aa1.93□□□□□ -2.1
RUB1YDR139C JHD2P47156 728 aaPredicted RBP1.93□□□□□ -2.1
RUB1YDR139C YNL134CP53912 376 aaKnown RBP1.93□□□□□ -2.1
RUB1YDR139C PAM18Q07914 168 aa1.93□□□□□ -2.1
RUB1YDR139C MED4Q12343 284 aa1.93□□□□□ -2.1
RUB1YDR139C IPP1P00817 287 aaKnown RBP1.92□□□□□ -2.1
RUB1YDR139C DSF1P0CX08 502 aa1.92□□□□□ -2.1
RUB1YDR139C YNR073CP0CX09 502 aa1.92□□□□□ -2.1
RUB1YDR139C VMA11P32842 164 aa1.92□□□□□ -2.1
RUB1YDR139C CTR2P38865 189 aa1.92□□□□□ -2.1
RUB1YDR139C HOC1P47124 396 aa1.92□□□□□ -2.1
RUB1YDR139C KRE28Q04431 385 aa1.92□□□□□ -2.1
RUB1YDR139C SEI1Q06058 285 aa1.92□□□□□ -2.1
RUB1YDR139C HTL1Q9URQ5 78 aa1.92□□□□□ -2.1
RUB1YDR139C RPL9AP05738 191 aaKnown RBP1.91□□□□□ -2.1
RUB1YDR139C TCP1P12612 559 aaKnown RBP1.91□□□□□ -2.1
RUB1YDR139C FBA1P14540 359 aaKnown RBP1.91□□□□□ -2.1
RUB1YDR139C PEX4P29340 183 aa1.91□□□□□ -2.1
RUB1YDR139C YPT52P36018 234 aaKnown RBP1.91□□□□□ -2.1
RUB1YDR139C YKL075CP36083 450 aa1.91□□□□□ -2.1
RUB1YDR139C YMR144WP40214 342 aaKnown RBP1.91□□□□□ -2.1
RUB1YDR139C AYR1P40471 297 aa1.91□□□□□ -2.1
RUB1YDR139C YFR054CP43622 192 aa1.91□□□□□ -2.1
RUB1YDR139C HAM1P47119 197 aaKnown RBP1.91□□□□□ -2.1
RUB1YDR139C RPL9BP51401 191 aaKnown RBP1.91□□□□□ -2.1
RUB1YDR139C ATO3Q12359 275 aa1.91□□□□□ -2.1
RUB1YDR139C ATG31Q12421 196 aa1.91□□□□□ -2.1
RUB1YDR139C SIR4P11978 1358 aa1.9□□□□□ -2.11
RUB1YDR139C ERD2P18414 219 aa1.9□□□□□ -2.11
RUB1YDR139C SCL1P21243 252 aaKnown RBP1.9□□□□□ -2.11
RUB1YDR139C MDH3P32419 343 aaKnown RBP RIP-Chip data1.9□□□□□ -2.11not detected
RUB1YDR139C ILM1P47155 203 aa1.9□□□□□ -2.11
RUB1YDR139C SRL4Q03085 281 aa1.9□□□□□ -2.11
RUB1YDR139C MRPS8Q03799 155 aa1.9□□□□□ -2.11
RUB1YDR139C YLR126CQ12288 251 aa1.9□□□□□ -2.11
RUB1YDR139C SNA3P14359 133 aa1.89□□□□□ -2.11
RUB1YDR139C FMC1P40491 155 aa1.89□□□□□ -2.11
RUB1YDR139C CIS3P47001 227 aa1.89□□□□□ -2.11
RUB1YDR139C YJR056CP47115 236 aa1.89□□□□□ -2.11
RUB1YDR139C YGR219WP53307 113 aa1.89□□□□□ -2.11
RUB1YDR139C ATG39Q06159 398 aa1.89□□□□□ -2.11
RUB1YDR139C YOR020W-AQ3E824 90 aa1.89□□□□□ -2.11
RUB1YDR139C YAR068WP39564 161 aa1.88□□□□□ -2.11
RUB1YDR139C LSM4P40070 187 aaKnown RBP1.88□□□□□ -2.11
RUB1YDR139C PEP8P40335 379 aa1.88□□□□□ -2.11
RUB1YDR139C RRN5Q02983 363 aa1.88□□□□□ -2.11
RUB1YDR139C MEU1Q07938 337 aaKnown RBP RIP-Chip data1.88□□□□□ -2.11not detected
RUB1YDR139C RAS2P01120 322 aaKnown RBP1.87□□□□□ -2.11
RUB1YDR139C MSW1P04803 379 aa1.87□□□□□ -2.11
RUB1YDR139C MRPL25P23369 157 aa1.87□□□□□ -2.11
RUB1YDR139C RPS5P26783 225 aaKnown RBP1.87□□□□□ -2.11
RUB1YDR139C PHO88P38264 188 aaPredicted RBP1.87□□□□□ -2.11
RUB1YDR139C RPF1P38805 295 aaKnown RBP1.87□□□□□ -2.11
RUB1YDR139C CAT5P41735 233 aa1.87□□□□□ -2.11
RUB1YDR139C RPA43P46669 326 aa1.87□□□□□ -2.11
RUB1YDR139C ERG25P53045 309 aa1.87□□□□□ -2.11
RUB1YDR139C NEJ1Q06148 342 aa1.87□□□□□ -2.11
RUB1YDR139C MSA1Q08471 629 aa1.87□□□□□ -2.11
RUB1YDR139C NIP7Q08962 181 aaKnown RBP1.87□□□□□ -2.11
RUB1YDR139C GRX2P17695 143 aaKnown RBP1.86□□□□□ -2.11
RUB1YDR139C YIL001WP40560 513 aa1.86□□□□□ -2.11
RUB1YDR139C YML096WQ04489 525 aa1.86□□□□□ -2.11
RUB1YDR139C SSQ1Q05931 657 aaPredicted RBP1.86□□□□□ -2.11
RUB1YDR139C FCY2P17064 533 aa1.85□□□□□ -2.11
RUB1YDR139C OAC1P32332 324 aa1.85□□□□□ -2.11
RUB1YDR139C RIB1P38066 345 aa1.85□□□□□ -2.11
RUB1YDR139C LDB7P38210 180 aa1.85□□□□□ -2.11
RUB1YDR139C CUE1P38428 203 aa1.85□□□□□ -2.11
RUB1YDR139C RSM25P40496 264 aa1.85□□□□□ -2.11
RUB1YDR139C CYT2Q00873 224 aa1.85□□□□□ -2.11
RUB1YDR139C PET117Q02771 107 aa1.85□□□□□ -2.11
RUB1YDR139C HEM25Q07534 307 aa1.85□□□□□ -2.11
RUB1YDR139C YPL229WQ99395 206 aa1.85□□□□□ -2.11
RUB1YDR139C YCR016WP25617 290 aaKnown RBP1.84□□□□□ -2.11
RUB1YDR139C SRB4P32569 687 aa1.84□□□□□ -2.11
RUB1YDR139C ECM33P38248 429 aaKnown RBP1.84□□□□□ -2.11
RUB1YDR139C ERV15P38312 142 aa1.84□□□□□ -2.11
RUB1YDR139C YHR180WP38868 163 aa1.84□□□□□ -2.11
RUB1YDR139C VTC1P40046 129 aaRIP-Chip data1.84□□□□□ -2.11not detected
RUB1YDR139C BMT5P40493 336 aa1.84□□□□□ -2.11
RUB1YDR139C YKE4P40544 346 aa1.84□□□□□ -2.11
RUB1YDR139C NUP84P52891 726 aa1.84□□□□□ -2.11
RUB1YDR139C YLR283WQ05867 314 aa1.84□□□□□ -2.11
RUB1YDR139C ARR2Q06597 130 aa1.84□□□□□ -2.11
RUB1YDR139C USB1Q12208 290 aaKnown RBP1.84□□□□□ -2.11
RUB1YDR139C BEM2P39960 2167 aaKnown RBP1.83□□□□□ -2.12
RUB1YDR139C RPO26P20435 155 aa1.83□□□□□ -2.12
RUB1YDR139C YBR063CP38083 404 aa1.83□□□□□ -2.12
RUB1YDR139C YHR022CP38763 256 aa1.83□□□□□ -2.12
RUB1YDR139C PRM10P42946 383 aa1.83□□□□□ -2.12
RUB1YDR139C MCM22P47167 239 aa1.83□□□□□ -2.12
RUB1YDR139C ABF2Q02486 183 aa1.83□□□□□ -2.12
RUB1YDR139C CDC7P06243 507 aa1.82□□□□□ -2.12
RUB1YDR139C MDH2P22133 377 aa1.82□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 21.7 ms