RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeast

Gene SCM3, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCM3	YDL139C	YEF1	P32622	495 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	RRP4	P38792	359 aa	Known RBP	4.6	□□□□□ -1.67
SCM3	YDL139C	ARO9	P38840	513 aa	Predicted RBP	4.6	□□□□□ -1.67
SCM3	YDL139C	YIL086C	P40503	102 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	MET28	P40573	187 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	IRC7	P43623	340 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	RBL2	P48606	106 aa	Known RBP	4.6	□□□□□ -1.67
SCM3	YDL139C	YGR250C	P53316	781 aa	Known RBP	4.6	□□□□□ -1.67
SCM3	YDL139C	COS1	P53822	381 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	GOR1	P53839	350 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	PGA1	P53896	198 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	ERG13	P54839	491 aa	Known RBP	4.6	□□□□□ -1.67
SCM3	YDL139C	ATG21	Q02887	496 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	MSS11	Q03825	758 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	KRE28	Q04431	385 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	YDL114W	Q07530	308 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	HRT1	Q08273	121 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	RCN2	Q12044	265 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SCM3	YDL139C	HER1	Q12276	1246 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	STE12	P13574	688 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	YPK2	P18961	677 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	CLB2	P24869	491 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	PTP1	P25044	335 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	SSE2	P32590	693 aa	Known RBP	4.59	□□□□□ -1.67
SCM3	YDL139C	EMP70	P32802	667 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	SHE1	P38200	338 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	ISC1	P40015	477 aa	Known RBP	4.59	□□□□□ -1.67
SCM3	YDL139C	ATF1	P40353	525 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	NUP57	P48837	541 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	TRM9	P49957	279 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	IMO32	P53219	342 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	MKC7	P53379	596 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	YNL092W	P53934	400 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	EGD1	Q02642	157 aa	Known RBP	4.59	□□□□□ -1.67
SCM3	YDL139C	YMR087W	Q04299	284 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	MGR3	Q04472	501 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	YLR173W	Q06247	608 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	MRPL35	Q06678	367 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	SSK1	Q07084	712 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	BSC6	Q08280	497 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	TGS1	Q12052	315 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	TIR4	Q12218	487 aa	Predicted RBP	4.59	□□□□□ -1.67
SCM3	YDL139C	YRM1	Q12340	786 aa		4.59	□□□□□ -1.67
SCM3	YDL139C	TOR2	P32600	2474 aa	Known RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	YOL163W	P0CF20	169 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SCM3	YDL139C	SNF6	P18888	332 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	RPB8	P20436	146 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	KGD1	P20967	1014 aa	Known RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	IMG1	P25626	169 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	RPS5	P26783	225 aa	Known RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	FAA1	P30624	700 aa	Known RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	SSH4	P32343	579 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	HIR2	P32480	875 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	MDL1	P33310	695 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	YBR063C	P38083	404 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	YJL068C	P40363	299 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	AIM20	P40451	204 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	STB1	P42845	420 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	YGL117W	P53133	265 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	YGR067C	P53243	804 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	YNR062C	P53748	327 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	ASI3	P53983	676 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	ABZ2	Q03266	374 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	RRP17	Q04031	235 aa	Predicted RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	VID22	Q05934	901 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	RRP9	Q06506	573 aa	Known RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	TAZ1	Q06510	381 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	ASR1	Q06834	288 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	RDR1	Q08904	546 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	THP3	Q12049	470 aa	Known RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	BTS1	Q12051	335 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	FRE7	Q12333	620 aa		4.58	□□□□□ -1.68
SCM3	YDL139C	PRP46	Q12417	451 aa	Predicted RBP	4.58	□□□□□ -1.68
SCM3	YDL139C	SEC16	P48415	2195 aa	Known RBP	4.57	□□□□□ -1.68
SCM3	YDL139C	PRB1	P09232	635 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	PET122	P10355	254 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	TFS1	P14306	219 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	ERD2	P18414	219 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	RPA135	P22138	1203 aa	Known RBP	4.57	□□□□□ -1.68
SCM3	YDL139C	RRP7	P25368	297 aa	Predicted RBP	4.57	□□□□□ -1.68
SCM3	YDL139C	TIM12	P32830	109 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	ORC2	P32833	620 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	CIN1	P40987	1014 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	BAT2	P47176	376 aa	Known RBP	4.57	□□□□□ -1.68
SCM3	YDL139C	TOM22	P49334	152 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	RRN9	P53437	365 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	YPL108W	Q02872	168 aa	Predicted RBP	4.57	□□□□□ -1.68
SCM3	YDL139C	ARP10	Q04549	284 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	RNH1	Q04740	348 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	YLR446W	Q06204	433 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	MDM36	Q06820	579 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	YER175W-A	Q8TGU4	54 aa		4.57	□□□□□ -1.68
SCM3	YDL139C	YEL009C-A	A0A023PZF2	135 aa		4.56	□□□□□ -1.68
SCM3	YDL139C	AAC1	P04710	309 aa		4.56	□□□□□ -1.68
SCM3	YDL139C	PDE2	P06776	526 aa		4.56	□□□□□ -1.68
SCM3	YDL139C	GRX2	P17695	143 aa	Known RBP	4.56	□□□□□ -1.68
SCM3	YDL139C	CPR2	P23285	205 aa		4.56	□□□□□ -1.68
SCM3	YDL139C	BUD5	P25300	642 aa	Predicted RBP	4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 35.5 ms