RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	BSC1	Q12140	328 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	NSL1	Q12143	216 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	COX3	P00420	269 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	SCH9	P11792	824 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	MTF1	P14908	341 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	MDM10	P18409	493 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	RBK1	P25332	333 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	CSM1	P25651	190 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	FAA1	P30624	700 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	CSE1	P33307	960 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	MRPL40	P36534	297 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	RRP4	P38792	359 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	ISC1	P40015	477 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	NAS2	P40555	220 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	TES1	P41903	349 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	GET1	P53192	235 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	EFM5	P53200	248 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	PCP1	P53259	346 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	CLD1	P53264	445 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	AQR1	P53943	586 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	IRC15	Q02733	499 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	YMR254C	Q04838	102 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	RTN1	Q04947	295 aa	Known RBP	3.56	□□□□□ -1.84
UBX5	YDR330W	RIF2	Q06208	395 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	GGA1	Q06336	557 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	YLR413W	Q06689	675 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	MUM3	Q08750	479 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	RKM5	Q12367	367 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	ICT1	Q12385	394 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	PEX11	Q12462	236 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	SAS5	Q99314	248 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	VPS13	Q07878	3144 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	UBR1	P19812	1950 aa		3.56	□□□□□ -1.84
UBX5	YDR330W	UBA1	P22515	1024 aa	Known RBP	3.55	□□□□□ -1.84
UBX5	YDR330W	ATP7	P30902	174 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	ERG1	P32476	496 aa	Known RBP	3.55	□□□□□ -1.84
UBX5	YDR330W	LDB7	P38210	180 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	IST2	P38250	946 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	EFM1	P38732	585 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	YHR045W	P38775	560 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	RPA34	P47006	233 aa	Predicted RBP	3.55	□□□□□ -1.84
UBX5	YDR330W	ROG1	P53118	685 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	GIP3	Q03016	1276 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	SPO19	Q03029	223 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	MGR3	Q04472	501 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	SYO1	Q07395	620 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	NSE1	Q07913	336 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	PML1	Q07930	204 aa	Predicted RBP	3.55	□□□□□ -1.84
UBX5	YDR330W	SGT1	Q08446	395 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	NDD1	Q08887	554 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	YDL009C	Q12210	107 aa		3.55	□□□□□ -1.84
UBX5	YDR330W	CDC21	P06785	304 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	SPT3	P06844	337 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	COS2	P0CX12	379 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	COS3	P0CX13	379 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YAR066W	P0CX18	203 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YHR214W	P0CX19	203 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	UGA1	P17649	471 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	CCA1	P21269	546 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	PTP1	P25044	335 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	RPL5	P26321	297 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	CYS4	P32582	507 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	RPS1A	P33442	255 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	CAF4	P36130	643 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	TDA11	P38854	504 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	CYC2	P38909	366 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	NPT1	P39683	429 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	PDS1	P40316	373 aa	Predicted RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	PAN6	P40459	309 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	SNL1	P40548	159 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	AZF1	P41696	914 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YRB1	P41920	201 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	COS4	P43542	379 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	FMP32	P43557	207 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	BNA3	P47039	444 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	HMS2	P47175	358 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	VMA10	P48836	114 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	GPI8	P49018	411 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	NAS6	P50086	228 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YIP5	P53108	310 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	SHY1	P53266	389 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YNL033W	P53964	284 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YNL019C	P53975	284 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	PRP38	Q00723	242 aa	Predicted RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	SKI8	Q02793	397 aa	Predicted RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	PRP3	Q03338	469 aa	Predicted RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	GMC2	Q06201	188 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	GET4	Q12125	312 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	YLR046C	Q12253	270 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	ATR1	P13090	542 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	TAL1	P15019	335 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	ARF2	P19146	181 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	DAL81	P21657	970 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	RVS161	P25343	265 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	YCP4	P25349	247 aa	Known RBP	3.54	□□□□□ -1.84
UBX5	YDR330W	CIN8	P27895	1000 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	VPH2	P32341	215 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
UBX5	YDR330W	MNL1	P38888	796 aa		3.54	□□□□□ -1.84
UBX5	YDR330W	DHH1	P39517	506 aa	Known RBP	3.54	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 24 ms