RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C DST1P07273 309 aa2.17□□□□□ -2.06
SNU56YDR240C ECT1P33412 323 aa2.17□□□□□ -2.06
SNU56YDR240C SKT5P34226 696 aa2.17□□□□□ -2.06
SNU56YDR240C ASC1P38011 319 aaKnown RBP2.17□□□□□ -2.06
SNU56YDR240C SLM4P38247 162 aa2.17□□□□□ -2.06
SNU56YDR240C VHS2P40463 436 aa2.17□□□□□ -2.06
SNU56YDR240C YGR117CP53270 476 aa2.17□□□□□ -2.06
SNU56YDR240C YMR155WQ03795 547 aa2.17□□□□□ -2.06
SNU56YDR240C YPS3Q12303 508 aa2.17□□□□□ -2.06
SNU56YDR240C HSP104P31539 908 aaKnown RBP2.16□□□□□ -2.06
SNU56YDR240C LSM12P38828 187 aaKnown RBP2.16□□□□□ -2.06
SNU56YDR240C YER079WP40052 210 aaKnown RBP2.16□□□□□ -2.06
SNU56YDR240C MMF1P40185 145 aaKnown RBP2.16□□□□□ -2.06
SNU56YDR240C ATP22P50273 684 aaPredicted RBP2.16□□□□□ -2.06
SNU56YDR240C IGO1P53897 168 aa2.16□□□□□ -2.06
SNU56YDR240C FCY22Q12119 530 aa2.16□□□□□ -2.06
SNU56YDR240C TPI1P00942 248 aaKnown RBP2.15□□□□□ -2.06
SNU56YDR240C ALG1P16661 449 aa2.15□□□□□ -2.06
SNU56YDR240C URA7P28274 579 aaKnown RBP2.15□□□□□ -2.06
SNU56YDR240C SKN1P33336 771 aa2.15□□□□□ -2.06
SNU56YDR240C PFF1P38244 976 aa2.15□□□□□ -2.06
SNU56YDR240C PFS1P38872 237 aa2.15□□□□□ -2.06
SNU56YDR240C CHL4P38907 458 aa2.15□□□□□ -2.06
SNU56YDR240C STN1P38960 494 aa2.15□□□□□ -2.06
SNU56YDR240C HST1P53685 503 aa2.15□□□□□ -2.06
SNU56YDR240C BNI5P53890 448 aaKnown RBP2.15□□□□□ -2.06
SNU56YDR240C PRP3Q03338 469 aaPredicted RBP2.15□□□□□ -2.06
SNU56YDR240C INH1P01097 85 aa2.14□□□□□ -2.07
SNU56YDR240C GIT1P25346 518 aa2.14□□□□□ -2.07
SNU56YDR240C ADK2P26364 225 aa2.14□□□□□ -2.07
SNU56YDR240C FMT1P32785 401 aa2.14□□□□□ -2.07
SNU56YDR240C PFS2P42841 465 aaKnown RBP2.14□□□□□ -2.07
SNU56YDR240C SPR6Q01684 191 aa2.14□□□□□ -2.07
SNU56YDR240C MDM1Q01846 1127 aa2.14□□□□□ -2.07
SNU56YDR240C YDL199CQ12407 687 aa2.14□□□□□ -2.07
SNU56YDR240C CDC21P06785 304 aa2.14□□□□□ -2.07
SNU56YDR240C SSC1P0CS90 654 aaKnown RBP2.14□□□□□ -2.07
SNU56YDR240C FUR1P18562 216 aaKnown RBP2.14□□□□□ -2.07
SNU56YDR240C MCR1P36060 302 aaKnown RBP2.14□□□□□ -2.07
SNU56YDR240C BYE1P36106 594 aa2.14□□□□□ -2.07
SNU56YDR240C HEL1P36113 551 aa2.14□□□□□ -2.07
SNU56YDR240C INM1P38710 295 aa2.14□□□□□ -2.07
SNU56YDR240C NAB3P38996 802 aaKnown RBP RIP-Chip data2.14□□□□□ -2.07not detected
SNU56YDR240C TRM112P53738 135 aaPredicted RBP2.14□□□□□ -2.07
SNU56YDR240C SUB1P54000 292 aaKnown RBP2.14□□□□□ -2.07
SNU56YDR240C AEP3Q12089 606 aa2.14□□□□□ -2.07
SNU56YDR240C PCL9Q12477 304 aa2.14□□□□□ -2.07
SNU56YDR240C ARO3P14843 370 aaKnown RBP2.13□□□□□ -2.07
SNU56YDR240C JNM1P36224 373 aa2.13□□□□□ -2.07
SNU56YDR240C PEX22P39718 180 aa2.13□□□□□ -2.07
SNU56YDR240C YER184CP39961 794 aa2.13□□□□□ -2.07
SNU56YDR240C STE24P47154 453 aa2.13□□□□□ -2.07
SNU56YDR240C YDR341CQ05506 607 aaKnown RBP2.13□□□□□ -2.07
SNU56YDR240C NSE1Q07913 336 aa2.13□□□□□ -2.07
SNU56YDR240C VPS54Q12071 889 aa2.13□□□□□ -2.07
SNU56YDR240C RRG1Q12167 365 aaPredicted RBP2.13□□□□□ -2.07
SNU56YDR240C RPS19AP07280 144 aaKnown RBP2.12□□□□□ -2.07
SNU56YDR240C RPS19BP07281 144 aaPredicted RBP2.12□□□□□ -2.07
SNU56YDR240C CPR2P23285 205 aa2.12□□□□□ -2.07
SNU56YDR240C TPS2P31688 896 aaKnown RBP2.12□□□□□ -2.07
SNU56YDR240C SOL2P37262 315 aa2.12□□□□□ -2.07
SNU56YDR240C ZTA1P38230 334 aaKnown RBP2.12□□□□□ -2.07
SNU56YDR240C STP2P38704 541 aa2.12□□□□□ -2.07
SNU56YDR240C RPL21AQ02753 160 aaKnown RBP2.12□□□□□ -2.07
SNU56YDR240C ERB1Q04660 807 aaKnown RBP2.12□□□□□ -2.07
SNU56YDR240C RFM1Q12192 310 aa2.12□□□□□ -2.07
SNU56YDR240C HMS1Q12398 434 aa2.12□□□□□ -2.07
SNU56YDR240C YOP1Q12402 180 aa2.12□□□□□ -2.07
SNU56YDR240C RPL21BQ12672 160 aaKnown RBP2.12□□□□□ -2.07
SNU56YDR240C MEX67Q99257 599 aaKnown RBP2.12□□□□□ -2.07
SNU56YDR240C CMK2P22517 447 aa2.11□□□□□ -2.07
SNU56YDR240C SPO23P33757 523 aa2.11□□□□□ -2.07
SNU56YDR240C GPX2P38143 162 aa2.11□□□□□ -2.07
SNU56YDR240C TRF5P48561 642 aaKnown RBP2.11□□□□□ -2.07
SNU56YDR240C YGR067CP53243 804 aa2.11□□□□□ -2.07
SNU56YDR240C ENT5Q03769 411 aaKnown RBP2.11□□□□□ -2.07
SNU56YDR240C YDR131CQ03899 556 aa2.11□□□□□ -2.07
SNU56YDR240C PUT4P15380 627 aa2.1□□□□□ -2.07
SNU56YDR240C CLB1P24868 471 aa2.1□□□□□ -2.07
SNU56YDR240C ERV1P27882 189 aa2.1□□□□□ -2.07
SNU56YDR240C ECM8P38246 354 aa2.1□□□□□ -2.07
SNU56YDR240C WSS1P38838 269 aa2.1□□□□□ -2.07
SNU56YDR240C SER3P40054 469 aa2.1□□□□□ -2.07
SNU56YDR240C ATM1P40416 690 aa2.1□□□□□ -2.07
SNU56YDR240C TCB2P48231 1178 aa2.1□□□□□ -2.07
SNU56YDR240C RRN9P53437 365 aa2.1□□□□□ -2.07
SNU56YDR240C MSC3Q05812 728 aa2.1□□□□□ -2.07
SNU56YDR240C SLF1Q12034 447 aaKnown RBP2.1□□□□□ -2.07
SNU56YDR240C SFM1Q12314 213 aa2.1□□□□□ -2.07
SNU56YDR240C LDB17Q12342 491 aa2.1□□□□□ -2.07
SNU56YDR240C HIF1Q12373 385 aa2.1□□□□□ -2.07
SNU56YDR240C TPK3P05986 398 aa2.09□□□□□ -2.07
SNU56YDR240C RPS18AP0CX55 146 aaKnown RBP2.09□□□□□ -2.07
SNU56YDR240C RPS18BP0CX56 146 aaPredicted RBP2.09□□□□□ -2.07
SNU56YDR240C ASP3-2P0CX77 362 aa2.09□□□□□ -2.07
SNU56YDR240C ASP3-3P0CX78 362 aa2.09□□□□□ -2.07
SNU56YDR240C ASP3-4P0CX79 362 aa2.09□□□□□ -2.07
SNU56YDR240C ASP3-1P0CZ17 362 aa2.09□□□□□ -2.07
SNU56YDR240C ARF1P11076 181 aaKnown RBP2.09□□□□□ -2.07
SNU56YDR240C PDX1P16451 410 aa2.09□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 24.6 ms