RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeast

Gene UBC6, Length 753 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC6	YER100W	ORM2	Q06144	216 aa		4.82	□□□□□ -1.64
UBC6	YER100W	LSP1	Q12230	341 aa	Known RBP	4.82	□□□□□ -1.64
UBC6	YER100W	PFK27	Q12471	397 aa	Predicted RBP	4.82	□□□□□ -1.64
UBC6	YER100W	RAD61	Q99359	647 aa		4.82	□□□□□ -1.64
UBC6	YER100W	SUP35	P05453	685 aa	Known RBP	4.81	□□□□□ -1.64
UBC6	YER100W	CDC21	P06785	304 aa		4.81	□□□□□ -1.64
UBC6	YER100W	PUT4	P15380	627 aa		4.81	□□□□□ -1.64
UBC6	YER100W	EXO70	P19658	623 aa		4.81	□□□□□ -1.64
UBC6	YER100W	RPI1	P23250	407 aa	Known RBP	4.81	□□□□□ -1.64
UBC6	YER100W	PPZ1	P26570	692 aa		4.81	□□□□□ -1.64
UBC6	YER100W	SPT10	P35208	640 aa		4.81	□□□□□ -1.64
UBC6	YER100W	MIC60	P36112	540 aa		4.81	□□□□□ -1.64
UBC6	YER100W	RTS2	P40962	232 aa		4.81	□□□□□ -1.64
UBC6	YER100W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
UBC6	YER100W	AIP1	P46680	615 aa	Known RBP	4.81	□□□□□ -1.64
UBC6	YER100W	YIF1	P53845	314 aa	Known RBP	4.81	□□□□□ -1.64
UBC6	YER100W	GPI15	P53961	229 aa		4.81	□□□□□ -1.64
UBC6	YER100W	NUP53	Q03790	475 aa		4.81	□□□□□ -1.64
UBC6	YER100W	SMA2	Q04658	369 aa		4.81	□□□□□ -1.64
UBC6	YER100W	SGT1	Q08446	395 aa		4.81	□□□□□ -1.64
UBC6	YER100W	OSW1	Q08692	278 aa		4.81	□□□□□ -1.64
UBC6	YER100W	CHS1	P08004	1131 aa		4.8	□□□□□ -1.64
UBC6	YER100W	RNR2	P09938	399 aa	Known RBP	4.8	□□□□□ -1.64
UBC6	YER100W	VPS17	P32913	551 aa		4.8	□□□□□ -1.64
UBC6	YER100W	SPP381	P38282	291 aa	Predicted RBP	4.8	□□□□□ -1.64
UBC6	YER100W	YHR122W	P38829	231 aa		4.8	□□□□□ -1.64
UBC6	YER100W	YMR124W	P39523	943 aa	Known RBP	4.8	□□□□□ -1.64
UBC6	YER100W	SAM50	P53969	484 aa		4.8	□□□□□ -1.64
UBC6	YER100W	LGE1	Q02796	332 aa	Known RBP	4.8	□□□□□ -1.64
UBC6	YER100W	RSC9	Q03124	581 aa		4.8	□□□□□ -1.64
UBC6	YER100W	ABZ2	Q03266	374 aa		4.8	□□□□□ -1.64
UBC6	YER100W	URC2	Q04411	772 aa		4.8	□□□□□ -1.64
UBC6	YER100W	SNT309	Q06091	175 aa	Predicted RBP	4.8	□□□□□ -1.64
UBC6	YER100W	CUR1	Q06469	252 aa		4.8	□□□□□ -1.64
UBC6	YER100W	SKI7	Q08491	747 aa	Predicted RBP	4.8	□□□□□ -1.64
UBC6	YER100W	YLL056C	Q12177	298 aa		4.8	□□□□□ -1.64
UBC6	YER100W	FRE7	Q12333	620 aa		4.8	□□□□□ -1.64
UBC6	YER100W	RNH203	Q12338	110 aa		4.8	□□□□□ -1.64
UBC6	YER100W	RKM5	Q12367	367 aa		4.8	□□□□□ -1.64
UBC6	YER100W	VPS63	O13549	108 aa		4.79	□□□□□ -1.64
UBC6	YER100W	AMD1	P15274	810 aa	Known RBP	4.79	□□□□□ -1.64
UBC6	YER100W	HMX1	P32339	317 aa		4.79	□□□□□ -1.64
UBC6	YER100W	YBR139W	P38109	508 aa		4.79	□□□□□ -1.64
UBC6	YER100W	ERG7	P38604	731 aa		4.79	□□□□□ -1.64
UBC6	YER100W	OSH3	P38713	996 aa	Known RBP	4.79	□□□□□ -1.64
UBC6	YER100W	SPG5	P42933	373 aa		4.79	□□□□□ -1.64
UBC6	YER100W	YPT11	P48559	417 aa		4.79	□□□□□ -1.64
UBC6	YER100W	RRP46	P53256	223 aa	Predicted RBP	4.79	□□□□□ -1.64
UBC6	YER100W	MSS11	Q03825	758 aa		4.79	□□□□□ -1.64
UBC6	YER100W	REX4	Q08237	289 aa		4.79	□□□□□ -1.64
UBC6	YER100W	RPL12A	P0CX53	165 aa	Known RBP	4.78	□□□□□ -1.64
UBC6	YER100W	RPL12B	P0CX54	165 aa		4.78	□□□□□ -1.64
UBC6	YER100W	GAL3	P13045	520 aa		4.78	□□□□□ -1.64
UBC6	YER100W	HNM1	P19807	563 aa		4.78	□□□□□ -1.64
UBC6	YER100W	RGT1	P32862	1170 aa		4.78	□□□□□ -1.64
UBC6	YER100W	ECM15	P35195	104 aa		4.78	□□□□□ -1.64
UBC6	YER100W	STP2	P38704	541 aa		4.78	□□□□□ -1.64
UBC6	YER100W	YFR018C	P43599	363 aa		4.78	□□□□□ -1.64
UBC6	YER100W	CWC22	P53333	577 aa	Known RBP	4.78	□□□□□ -1.64
UBC6	YER100W	YNL234W	P53857	426 aa		4.78	□□□□□ -1.64
UBC6	YER100W	PNG1	Q02890	363 aa		4.78	□□□□□ -1.64
UBC6	YER100W	MMT1	Q03218	510 aa		4.78	□□□□□ -1.64
UBC6	YER100W	YMR310C	Q04867	317 aa	Predicted RBP	4.78	□□□□□ -1.64
UBC6	YER100W	STE23	Q06010	1027 aa		4.78	□□□□□ -1.64
UBC6	YER100W	PEX27	Q08580	376 aa		4.78	□□□□□ -1.64
UBC6	YER100W	YLR112W	Q12130	139 aa		4.78	□□□□□ -1.64
UBC6	YER100W	RMD5	Q12508	421 aa		4.78	□□□□□ -1.64
UBC6	YER100W	YPT1	P01123	206 aa	Known RBP	4.77	□□□□□ -1.65
UBC6	YER100W	DST1	P07273	309 aa		4.77	□□□□□ -1.65
UBC6	YER100W	TUB1	P09733	447 aa	Known RBP	4.77	□□□□□ -1.65
UBC6	YER100W	IMA3	P0CW40	589 aa		4.77	□□□□□ -1.65
UBC6	YER100W	IMA4	P0CW41	589 aa		4.77	□□□□□ -1.65
UBC6	YER100W	MAS1	P10507	462 aa		4.77	□□□□□ -1.65
UBC6	YER100W	PRP16	P15938	1071 aa	Predicted RBP	4.77	□□□□□ -1.65
UBC6	YER100W	RIM2	P38127	377 aa		4.77	□□□□□ -1.65
UBC6	YER100W	PCL6	P40038	420 aa		4.77	□□□□□ -1.65
UBC6	YER100W	YER079W	P40052	210 aa	Known RBP	4.77	□□□□□ -1.65
UBC6	YER100W	YIP1	P53039	248 aa		4.77	□□□□□ -1.65
UBC6	YER100W	ALF1	P53904	254 aa		4.77	□□□□□ -1.65
UBC6	YER100W	YLR297W	Q05899	129 aa		4.77	□□□□□ -1.65
UBC6	YER100W	YPR078C	Q06813	372 aa		4.77	□□□□□ -1.65
UBC6	YER100W	SYO1	Q07395	620 aa		4.77	□□□□□ -1.65
UBC6	YER100W	IMA2	Q08295	589 aa		4.77	□□□□□ -1.65
UBC6	YER100W	GAL7	P08431	366 aa		4.76	□□□□□ -1.65
UBC6	YER100W	MSS116	P15424	664 aa	Known RBP	4.76	□□□□□ -1.65
UBC6	YER100W	PDR3	P33200	976 aa		4.76	□□□□□ -1.65
UBC6	YER100W	YHR177W	P38867	453 aa		4.76	□□□□□ -1.65
UBC6	YER100W	SPT8	P38915	602 aa		4.76	□□□□□ -1.65
UBC6	YER100W	LYS1	P38998	373 aa	RIP-Chip data	4.76	□□□□□ -1.65	not detected
UBC6	YER100W	GUF1	P46943	645 aa		4.76	□□□□□ -1.65
UBC6	YER100W	BNA3	P47039	444 aa	Known RBP	4.76	□□□□□ -1.65
UBC6	YER100W	SHE10	P53075	577 aa		4.76	□□□□□ -1.65
UBC6	YER100W	YGL082W	P53155	381 aa		4.76	□□□□□ -1.65
UBC6	YER100W	PCP1	P53259	346 aa		4.76	□□□□□ -1.65
UBC6	YER100W	RET3	P53600	189 aa		4.76	□□□□□ -1.65
UBC6	YER100W	ERG13	P54839	491 aa	Known RBP	4.76	□□□□□ -1.65
UBC6	YER100W	TIM11	P81449	96 aa	Predicted RBP	4.76	□□□□□ -1.65
UBC6	YER100W	MRPL51	Q06090	140 aa	Predicted RBP	4.76	□□□□□ -1.65
UBC6	YER100W	VPS74	Q06385	345 aa		4.76	□□□□□ -1.65
UBC6	YER100W	YLR413W	Q06689	675 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms