RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 VIP1Q06685 1146 aaKnown RBP-1.9□□□□□ -2.71
snR40snR40 SDH5Q08230 162 aa-1.9□□□□□ -2.71
snR40snR40 YPL199CQ08954 240 aa-1.9□□□□□ -2.71
snR40snR40 TDH2P00358 332 aaKnown RBP-1.91□□□□□ -2.72
snR40snR40 TDH3P00359 332 aaKnown RBP RIP-Chip data-1.91□□□□□ -2.72not detected
snR40snR40 IMA3P0CW40 589 aa-1.91□□□□□ -2.72
snR40snR40 IMA4P0CW41 589 aa-1.91□□□□□ -2.72
snR40snR40 URK1P27515 501 aa-1.91□□□□□ -2.72
snR40snR40 AAP1P37898 856 aaKnown RBP-1.91□□□□□ -2.72
snR40snR40 HSH155P49955 971 aaKnown RBP-1.91□□□□□ -2.72
snR40snR40 POP6P53218 158 aa-1.91□□□□□ -2.72
snR40snR40 SED1Q01589 338 aa-1.91□□□□□ -2.72
snR40snR40 MZM1Q03429 123 aaPredicted RBP-1.91□□□□□ -2.72
snR40snR40 VTI1Q04338 217 aa-1.91□□□□□ -2.72
snR40snR40 YDR114CQ04597 100 aa-1.91□□□□□ -2.72
snR40snR40 DCR2Q05924 578 aa-1.91□□□□□ -2.72
snR40snR40 YOL057WQ08225 711 aa-1.91□□□□□ -2.72
snR40snR40 IMA2Q08295 589 aa-1.91□□□□□ -2.72
snR40snR40 YOR378WQ08902 515 aa-1.91□□□□□ -2.72
snR40snR40 FUS3P16892 353 aaKnown RBP-1.92□□□□□ -2.72
snR40snR40 SRP68P38687 599 aaKnown RBP-1.92□□□□□ -2.72
snR40snR40 STT3P39007 718 aaKnown RBP-1.92□□□□□ -2.72
snR40snR40 FCY21P40039 528 aa-1.92□□□□□ -2.72
snR40snR40 TRF5P48561 642 aaKnown RBP-1.92□□□□□ -2.72
snR40snR40 PDS5Q04264 1277 aa-1.92□□□□□ -2.72
snR40snR40 MRX8Q05473 314 aa-1.92□□□□□ -2.72
snR40snR40 PEX30Q06169 523 aa-1.92□□□□□ -2.72
snR40snR40 YOL085CQ99345 113 aa-1.92□□□□□ -2.72
snR40snR40 PUT2P07275 575 aa-1.93□□□□□ -2.72
snR40snR40 SIN4P32259 974 aa-1.93□□□□□ -2.72
snR40snR40 ECM14P38836 430 aa-1.93□□□□□ -2.72
snR40snR40 MAD2P40958 196 aa-1.93□□□□□ -2.72
snR40snR40 IVY1Q04934 453 aa-1.93□□□□□ -2.72
snR40snR40 ATG23Q06671 453 aa-1.93□□□□□ -2.72
snR40snR40 YOR019WQ99248 730 aa-1.93□□□□□ -2.72
snR40snR40 RAD52P06778 471 aaKnown RBP-1.94□□□□□ -2.72
snR40snR40 MET2P08465 486 aa-1.94□□□□□ -2.72
snR40snR40 RPS21AP0C0V8 87 aaKnown RBP-1.94□□□□□ -2.72
snR40snR40 YML003WP0CF16 290 aa-1.94□□□□□ -2.72
snR40snR40 CDC24P11433 854 aaPredicted RBP-1.94□□□□□ -2.72
snR40snR40 KRE1P17260 313 aa-1.94□□□□□ -2.72
snR40snR40 HEM3P28789 327 aa-1.94□□□□□ -2.72
snR40snR40 MYO3P36006 1272 aa-1.94□□□□□ -2.72
snR40snR40 RIB5P38145 238 aa-1.94□□□□□ -2.72
snR40snR40 ANS1P38832 159 aa-1.94□□□□□ -2.72
snR40snR40 IGD1P43598 195 aa-1.94□□□□□ -2.72
snR40snR40 RPS10BP46784 105 aaKnown RBP-1.94□□□□□ -2.72
snR40snR40 BIR1P47134 954 aa-1.94□□□□□ -2.72
snR40snR40 RSM28Q03430 361 aa-1.94□□□□□ -2.72
snR40snR40 PET122P10355 254 aa-1.95□□□□□ -2.72
snR40snR40 SAM1P10659 382 aaKnown RBP-1.95□□□□□ -2.72
snR40snR40 SAM2P19358 384 aaKnown RBP-1.95□□□□□ -2.72
snR40snR40 ZRC1P20107 442 aa-1.95□□□□□ -2.72
snR40snR40 RAD5P32849 1169 aaPredicted RBP-1.95□□□□□ -2.72
snR40snR40 YBR137WP38276 179 aa-1.95□□□□□ -2.72
snR40snR40 YCH1P42937 148 aa-1.95□□□□□ -2.72
snR40snR40 SMC3P47037 1230 aa-1.95□□□□□ -2.72
snR40snR40 YGR237CP50089 785 aa-1.95□□□□□ -2.72
snR40snR40 STR3P53101 465 aaKnown RBP-1.95□□□□□ -2.72
snR40snR40 CLD1P53264 445 aa-1.95□□□□□ -2.72
snR40snR40 YMR155WQ03795 547 aa-1.95□□□□□ -2.72
snR40snR40 SMF3Q12078 473 aaPredicted RBP-1.95□□□□□ -2.72
snR40snR40 NOP56Q12460 504 aaKnown RBP RIP-Chip data-1.95□□□□□ -2.72not detected
snR40snR40 RAD61Q99359 647 aa-1.95□□□□□ -2.72
snR40snR40 AUS1Q08409 1394 aa-1.96□□□□□ -2.72
snR40snR40 YOL162WP0CF19 215 aa-1.96□□□□□ -2.72
snR40snR40 LCB1P25045 558 aaKnown RBP-1.96□□□□□ -2.72
snR40snR40 DBF4P32325 704 aa-1.96□□□□□ -2.72
snR40snR40 UTR4P32626 227 aa-1.96□□□□□ -2.72
snR40snR40 YJL049WP47048 450 aa-1.96□□□□□ -2.72
snR40snR40 MDE1P47095 244 aa-1.96□□□□□ -2.72
snR40snR40 YGR153WP48238 217 aa-1.96□□□□□ -2.72
snR40snR40 PTA1Q01329 785 aaPredicted RBP-1.96□□□□□ -2.72
snR40snR40 YPL080CQ02826 108 aa-1.96□□□□□ -2.72
snR40snR40 PPM1Q04081 328 aa-1.96□□□□□ -2.72
snR40snR40 DDC1Q08949 612 aa-1.96□□□□□ -2.72
snR40snR40 APL4Q12028 832 aa-1.96□□□□□ -2.72
snR40snR40 NUR1Q12066 484 aa-1.96□□□□□ -2.72
snR40snR40 TAO3P40468 2376 aa-1.96□□□□□ -2.72
snR40snR40 ATP12P22135 325 aa-1.97□□□□□ -2.72
snR40snR40 RSA4P25382 515 aaKnown RBP-1.97□□□□□ -2.72
snR40snR40 MSH2P25847 964 aa-1.97□□□□□ -2.72
snR40snR40 CLB6P32943 380 aa-1.97□□□□□ -2.72
snR40snR40 FRE2P36033 711 aa-1.97□□□□□ -2.72
snR40snR40 PKP1P40530 394 aa-1.97□□□□□ -2.72
snR40snR40 SWP82P43554 623 aa-1.97□□□□□ -2.72
snR40snR40 BNS1P50084 137 aa-1.97□□□□□ -2.72
snR40snR40 SNU71P53207 620 aaKnown RBP-1.97□□□□□ -2.72
snR40snR40 BUD32P53323 261 aa-1.97□□□□□ -2.72
snR40snR40 SLX4Q12098 748 aa-1.97□□□□□ -2.72
snR40snR40 VAR1P02381 398 aa-1.98□□□□□ -2.73
snR40snR40 KAR1P11927 433 aa-1.98□□□□□ -2.73
snR40snR40 POL4P25615 582 aa-1.98□□□□□ -2.73
snR40snR40 SKG6P32900 734 aaPredicted RBP-1.98□□□□□ -2.73
snR40snR40 YER135CP40082 130 aa-1.98□□□□□ -2.73
snR40snR40 ATG18P43601 500 aa-1.98□□□□□ -2.73
snR40snR40 YFR057WP43625 151 aa-1.98□□□□□ -2.73
snR40snR40 OGG1P53397 376 aaPredicted RBP-1.98□□□□□ -2.73
snR40snR40 ZDS2P54786 942 aa-1.98□□□□□ -2.73
snR40snR40 MTG1Q03151 367 aaPredicted RBP-1.98□□□□□ -2.73
Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms