RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W AFG1P32317 509 aa1.2□□□□□ -2.22
CDC39YCR093W SAS3P34218 831 aa1.2□□□□□ -2.22
CDC39YCR093W KKQ8P36004 724 aa1.2□□□□□ -2.22
CDC39YCR093W NUP133P36161 1157 aa1.2□□□□□ -2.22
CDC39YCR093W IFA38P38286 347 aa1.2□□□□□ -2.22
CDC39YCR093W UBS1P38290 277 aa1.2□□□□□ -2.22
CDC39YCR093W MKT1P40850 830 aaKnown RBP1.2□□□□□ -2.22
CDC39YCR093W EAF7P53911 425 aaKnown RBP1.2□□□□□ -2.22
CDC39YCR093W SAM50P53969 484 aa1.2□□□□□ -2.22
CDC39YCR093W ADA2Q02336 434 aa1.2□□□□□ -2.22
CDC39YCR093W MFB1Q04922 465 aa1.2□□□□□ -2.22
CDC39YCR093W YDR061WQ12298 539 aa1.2□□□□□ -2.22
CDC39YCR093W CTF3Q12748 733 aa1.2□□□□□ -2.22
CDC39YCR093W TFB5Q3E7C1 72 aaPredicted RBP1.2□□□□□ -2.22
CDC39YCR093W PRP16P15938 1071 aaPredicted RBP1.19□□□□□ -2.22
CDC39YCR093W CNA1P23287 553 aa1.19□□□□□ -2.22
CDC39YCR093W SWI4P25302 1093 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W SPS22P25380 463 aa1.19□□□□□ -2.22
CDC39YCR093W PUP3P25451 205 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W MTC7P32633 139 aa1.19□□□□□ -2.22
CDC39YCR093W DOA1P36037 715 aa1.19□□□□□ -2.22
CDC39YCR093W DUG2P38149 878 aa1.19□□□□□ -2.22
CDC39YCR093W FMP10P40098 244 aa1.19□□□□□ -2.22
CDC39YCR093W CCT7P42943 550 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W SGF73P53165 657 aa1.19□□□□□ -2.22
CDC39YCR093W GPI1P53306 609 aa1.19□□□□□ -2.22
CDC39YCR093W CAF40P53829 373 aa1.19□□□□□ -2.22
CDC39YCR093W MPS1P54199 764 aa1.19□□□□□ -2.22
CDC39YCR093W HSP31Q04432 237 aa1.19□□□□□ -2.22
CDC39YCR093W YDR056CQ12025 205 aa1.19□□□□□ -2.22
CDC39YCR093W ATG9Q12142 997 aa1.19□□□□□ -2.22
CDC39YCR093W YOR019WQ99248 730 aa1.19□□□□□ -2.22
CDC39YCR093W VTH1P40438 1549 aa1.19□□□□□ -2.22
CDC39YCR093W VTH2P40890 1549 aa1.19□□□□□ -2.22
CDC39YCR093W YOR1P53049 1477 aa1.19□□□□□ -2.22
CDC39YCR093W ALG8P40351 577 aa1.19□□□□□ -2.22
CDC39YCR093W ZIM17P42844 174 aa1.19□□□□□ -2.22
CDC39YCR093W IRC6P43615 237 aa1.19□□□□□ -2.22
CDC39YCR093W TAX4P47030 604 aa1.19□□□□□ -2.22
CDC39YCR093W ZPR1P53303 486 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W COP1P53622 1201 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W RIM13Q03792 727 aa1.19□□□□□ -2.22
CDC39YCR093W PDS5Q04264 1277 aa1.19□□□□□ -2.22
CDC39YCR093W PSK2Q08217 1101 aa1.19□□□□□ -2.22
CDC39YCR093W TIP41Q12199 356 aa1.19□□□□□ -2.22
CDC39YCR093W AFI1Q99222 893 aa1.19□□□□□ -2.22
CDC39YCR093W YML003WP0CF16 290 aa1.19□□□□□ -2.22
CDC39YCR093W RPL19AP0CX82 189 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W RPL19BP0CX83 189 aaPredicted RBP1.19□□□□□ -2.22
CDC39YCR093W SNF3P10870 884 aa1.19□□□□□ -2.22
CDC39YCR093W ADK2P26364 225 aa1.19□□□□□ -2.22
CDC39YCR093W PEX2P32800 271 aa1.19□□□□□ -2.22
CDC39YCR093W MDL1P33310 695 aa1.19□□□□□ -2.22
CDC39YCR093W TSC10P38342 320 aa1.19□□□□□ -2.22
CDC39YCR093W EFM2P38347 419 aa1.19□□□□□ -2.22
CDC39YCR093W MDM31P38880 579 aa1.19□□□□□ -2.22
CDC39YCR093W AXL1P40851 1208 aa1.19□□□□□ -2.22
CDC39YCR093W ROK1P45818 564 aaPredicted RBP1.19□□□□□ -2.22
CDC39YCR093W VPS75P53853 264 aa1.19□□□□□ -2.22
CDC39YCR093W YLR345WQ06137 509 aa1.19□□□□□ -2.22
CDC39YCR093W VIP1Q06685 1146 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W GRC3Q07845 632 aa1.19□□□□□ -2.22
CDC39YCR093W SEC7P11075 2009 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W TKL1P23254 680 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W RFA2P26754 273 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W GPI10P30777 616 aa1.19□□□□□ -2.22
CDC39YCR093W HSP104P31539 908 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W RAD5P32849 1169 aaPredicted RBP1.19□□□□□ -2.22
CDC39YCR093W ARP1P38696 384 aa1.19□□□□□ -2.22
CDC39YCR093W ATF1P40353 525 aa1.19□□□□□ -2.22
CDC39YCR093W CSM2P40465 213 aa1.19□□□□□ -2.22
CDC39YCR093W SNG1P46950 547 aa1.19□□□□□ -2.22
CDC39YCR093W YSA1Q01976 231 aa1.19□□□□□ -2.22
CDC39YCR093W MUK1Q02866 612 aa1.19□□□□□ -2.22
CDC39YCR093W MSS11Q03825 758 aa1.19□□□□□ -2.22
CDC39YCR093W IVY1Q04934 453 aa1.19□□□□□ -2.22
CDC39YCR093W GET3Q12154 354 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W RTN2Q12443 393 aa1.19□□□□□ -2.22
CDC39YCR093W CBP1P07252 654 aa1.19□□□□□ -2.22
CDC39YCR093W PUT2P07275 575 aa1.19□□□□□ -2.22
CDC39YCR093W YCR007CP25354 239 aa1.19□□□□□ -2.22
CDC39YCR093W BEM1P29366 551 aa1.19□□□□□ -2.22
CDC39YCR093W YMC1P32331 307 aa1.19□□□□□ -2.22
CDC39YCR093W VMA8P32610 256 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W YBL055CP34220 418 aaPredicted RBP1.19□□□□□ -2.22
CDC39YCR093W UBP13P38187 747 aa1.19□□□□□ -2.22
CDC39YCR093W AXL2P38928 823 aa1.19□□□□□ -2.22
CDC39YCR093W RPS7BP48164 190 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W YDL183CP48569 320 aa1.19□□□□□ -2.22
CDC39YCR093W YKU80Q04437 629 aa1.19□□□□□ -2.22
CDC39YCR093W PAL1Q05518 499 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W MRPL51Q06090 140 aaPredicted RBP1.19□□□□□ -2.22
CDC39YCR093W TFC6Q06339 672 aa1.19□□□□□ -2.22
CDC39YCR093W YOL075CQ08234 1294 aa1.19□□□□□ -2.22
CDC39YCR093W ICL2Q12031 575 aa1.19□□□□□ -2.22
CDC39YCR093W SLF1Q12034 447 aaKnown RBP1.19□□□□□ -2.22
CDC39YCR093W YDL009CQ12210 107 aa1.19□□□□□ -2.22
CDC39YCR093W SPP41P38904 1435 aa1.18□□□□□ -2.22
CDC39YCR093W VMA2P16140 517 aaKnown RBP1.18□□□□□ -2.22
CDC39YCR093W PRR1P28708 518 aa1.18□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 47.3 ms