RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	WHI5	Q12416	295 aa		7.09	□□□□□ -1.27
NUP1	YOR098C	YEL077C	Q3E7X8	1277 aa		7.09	□□□□□ -1.27
NUP1	YOR098C	YDJ1	P25491	409 aa	Known RBP	7.08	□□□□□ -1.28
NUP1	YOR098C	OYE2	Q03558	400 aa	Known RBP	7.08	□□□□□ -1.28
NUP1	YOR098C	JIP5	Q06214	492 aa	Predicted RBP	7.08	□□□□□ -1.28
NUP1	YOR098C	STB3	Q12427	513 aa		7.08	□□□□□ -1.28
NUP1	YOR098C	PPG1	P32838	368 aa		7.07	□□□□□ -1.28
NUP1	YOR098C	SEC8	P32855	1065 aa		7.07	□□□□□ -1.28
NUP1	YOR098C	TSR4	P25040	408 aa		7.07	□□□□□ -1.28
NUP1	YOR098C	PKH3	Q03306	898 aa	Predicted RBP	7.07	□□□□□ -1.28
NUP1	YOR098C	SSN2	P38931	1420 aa		7.07	□□□□□ -1.28
NUP1	YOR098C	PDR1	P12383	1068 aa		7.06	□□□□□ -1.28
NUP1	YOR098C	KIC1	P38692	1080 aa		7.06	□□□□□ -1.28
NUP1	YOR098C	RIM21	P48565	533 aa		7.06	□□□□□ -1.28
NUP1	YOR098C	MDG1	P53885	366 aa		7.06	□□□□□ -1.28
NUP1	YOR098C	TRL1	P09880	827 aa	Known RBP	7.06	□□□□□ -1.28
NUP1	YOR098C	INO80	P53115	1489 aa		7.05	□□□□□ -1.28
NUP1	YOR098C	DBP1	P24784	617 aa	Known RBP	7.05	□□□□□ -1.28
NUP1	YOR098C	MAK16	P10962	306 aa	Predicted RBP	7.04	□□□□□ -1.28
NUP1	YOR098C	RRP14	P36080	434 aa	Known RBP	7.04	□□□□□ -1.28
NUP1	YOR098C	TPS3	P38426	1054 aa	Known RBP	7.04	□□□□□ -1.28
NUP1	YOR098C	ORC6	P38826	435 aa		7.04	□□□□□ -1.28
NUP1	YOR098C	MDJ2	P42834	146 aa		7.04	□□□□□ -1.28
NUP1	YOR098C	ECM23	Q02710	187 aa		7.04	□□□□□ -1.28
NUP1	YOR098C	ESS1	P22696	170 aa		7.04	□□□□□ -1.28
NUP1	YOR098C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	7.03	□□□□□ -1.28	RIP-Chip
NUP1	YOR098C	NIS1	P53939	407 aa		7.03	□□□□□ -1.28
NUP1	YOR098C	CIT2	P08679	460 aa		7.03	□□□□□ -1.28
NUP1	YOR098C	GRS1	P38088	690 aa	Known RBP	7.03	□□□□□ -1.28
NUP1	YOR098C	HST2	P53686	357 aa		7.03	□□□□□ -1.28
NUP1	YOR098C	SCJ1	P25303	377 aa		7.03	□□□□□ -1.28
NUP1	YOR098C	FPR3	P38911	411 aa	Known RBP	7.03	□□□□□ -1.28
NUP1	YOR098C	PEP12	P32854	288 aa		7.02	□□□□□ -1.29
NUP1	YOR098C	PPX1	P38698	397 aa		7.02	□□□□□ -1.29
NUP1	YOR098C	IOC3	P43596	787 aa		7.02	□□□□□ -1.29
NUP1	YOR098C	FPK1	P53739	893 aa		7.02	□□□□□ -1.29
NUP1	YOR098C	KAR5	Q04746	504 aa		7.02	□□□□□ -1.29
NUP1	YOR098C	YJU3	P28321	313 aa		7.02	□□□□□ -1.29
NUP1	YOR098C	ALG12	P53730	551 aa		7.02	□□□□□ -1.29
NUP1	YOR098C	VAC8	P39968	578 aa		7.01	□□□□□ -1.29
NUP1	YOR098C	RAD54	P32863	898 aa		7.01	□□□□□ -1.29
NUP1	YOR098C	THI12	P42883	340 aa		7.01	□□□□□ -1.29
NUP1	YOR098C	THI5	P43534	340 aa		7.01	□□□□□ -1.29
NUP1	YOR098C	THI11	P47183	340 aa		7.01	□□□□□ -1.29
NUP1	YOR098C	THI13	Q07748	340 aa		7.01	□□□□□ -1.29
NUP1	YOR098C	SRP40	P32583	406 aa	Predicted RBP	7	□□□□□ -1.29
NUP1	YOR098C	ALD3	P54114	506 aa		7	□□□□□ -1.29
NUP1	YOR098C	KTR7	P40504	517 aa		7	□□□□□ -1.29
NUP1	YOR098C	MMP1	Q12372	583 aa		7	□□□□□ -1.29
NUP1	YOR098C	MET1	P36150	593 aa		6.99	□□□□□ -1.29
NUP1	YOR098C	RGR1	P19263	1082 aa		6.99	□□□□□ -1.29
NUP1	YOR098C	MON2	P48563	1636 aa	Predicted RBP	6.99	□□□□□ -1.29
NUP1	YOR098C	YKL091C	P33324	310 aa	Known RBP	6.99	□□□□□ -1.29
NUP1	YOR098C	UBX7	P38349	436 aa		6.98	□□□□□ -1.29
NUP1	YOR098C	PMC1	P38929	1173 aa	Predicted RBP	6.98	□□□□□ -1.29
NUP1	YOR098C	YMR196W	Q04336	1088 aa		6.98	□□□□□ -1.29
NUP1	YOR098C	RDS2	P19541	446 aa	Known RBP	6.98	□□□□□ -1.29
NUP1	YOR098C	SPT5	P27692	1063 aa	Known RBP	6.98	□□□□□ -1.29
NUP1	YOR098C	TFG1	P41895	735 aa	Predicted RBP	6.98	□□□□□ -1.29
NUP1	YOR098C	YJR107W	P47145	328 aa		6.98	□□□□□ -1.29
NUP1	YOR098C	ZDS1	P50111	915 aa	Known RBP	6.98	□□□□□ -1.29
NUP1	YOR098C	ARG8	P18544	423 aa		6.97	□□□□□ -1.29
NUP1	YOR098C	CWC15	Q03772	175 aa	Known RBP	6.97	□□□□□ -1.29
NUP1	YOR098C	SSB1	P11484	613 aa	Known RBP	6.97	□□□□□ -1.29
NUP1	YOR098C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	6.97	□□□□□ -1.29	not detected
NUP1	YOR098C	SSB2	P40150	613 aa	Known RBP	6.97	□□□□□ -1.29
NUP1	YOR098C	SCY1	P53009	804 aa		6.97	□□□□□ -1.29
NUP1	YOR098C	ALD6	P54115	500 aa	Known RBP	6.96	□□□□□ -1.29
NUP1	YOR098C	TPM2	P40414	161 aa		6.96	□□□□□ -1.3
NUP1	YOR098C	YGR273C	P53329	174 aa		6.95	□□□□□ -1.3
NUP1	YOR098C	YOL057W	Q08225	711 aa		6.95	□□□□□ -1.3
NUP1	YOR098C	MNL2	Q12205	849 aa		6.95	□□□□□ -1.3
NUP1	YOR098C	CLB5	P30283	435 aa		6.95	□□□□□ -1.3
NUP1	YOR098C	MGE1	P38523	228 aa		6.94	□□□□□ -1.3
NUP1	YOR098C	FYV10	P40492	516 aa		6.94	□□□□□ -1.3
NUP1	YOR098C	GAL2	P13181	574 aa		6.93	□□□□□ -1.3
NUP1	YOR098C	GRX4	P32642	244 aa		6.93	□□□□□ -1.3
NUP1	YOR098C	MVP1	P40959	511 aa	Known RBP	6.93	□□□□□ -1.3
NUP1	YOR098C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	6.93	□□□□□ -1.3	not detected
NUP1	YOR098C	NUT2	Q06213	157 aa		6.92	□□□□□ -1.3
NUP1	YOR098C	SKI3	P17883	1432 aa	Known RBP	6.92	□□□□□ -1.3
NUP1	YOR098C	BOL3	P39724	118 aa		6.92	□□□□□ -1.3
NUP1	YOR098C	ATH1	P48016	1211 aa		6.92	□□□□□ -1.3
NUP1	YOR098C	FRT1	Q99332	602 aa		6.92	□□□□□ -1.3
NUP1	YOR098C	MET4	P32389	672 aa		6.91	□□□□□ -1.3
NUP1	YOR098C	ATG1	P53104	897 aa		6.91	□□□□□ -1.3
NUP1	YOR098C	POB3	Q04636	552 aa	Known RBP	6.91	□□□□□ -1.3
NUP1	YOR098C	RSC30	P38781	883 aa		6.91	□□□□□ -1.3
NUP1	YOR098C	NSE3	Q05541	303 aa		6.91	□□□□□ -1.3
NUP1	YOR098C	BUD6	P41697	788 aa		6.9	□□□□□ -1.3
NUP1	YOR098C	RPN4	Q03465	531 aa		6.9	□□□□□ -1.3
NUP1	YOR098C	YOR238W	Q08634	303 aa		6.9	□□□□□ -1.3
NUP1	YOR098C	HAA1	Q12753	694 aa	Known RBP	6.9	□□□□□ -1.3
NUP1	YOR098C	SSF2	Q12153	453 aa	Predicted RBP	6.9	□□□□□ -1.31
NUP1	YOR098C	GUT1	P32190	709 aa		6.89	□□□□□ -1.31
NUP1	YOR098C	SOL3	P38858	249 aa		6.89	□□□□□ -1.31
NUP1	YOR098C	VPS16	Q03308	798 aa		6.89	□□□□□ -1.31
NUP1	YOR098C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	6.89	□□□□□ -1.31	not detected
NUP1	YOR098C	GRE2	Q12068	342 aa	Known RBP	6.88	□□□□□ -1.31
NUP1	YOR098C	YPP1	P46951	817 aa		6.88	□□□□□ -1.31

Retrieved 100 of 5,963 RNA–protein pairs in 71.2 ms