RNA–Protein interactions for RNA: YDL140C

RPO21, Transcript of RNA polymerase II largest subunit B220, yeast

Gene RPO21, Length 5,202 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPO21	YDL140C	ASF1	P32447	279 aa		4.54	□□□□□ -1.68
RPO21	YDL140C	SMY2	P32909	740 aa	Known RBP	4.54	□□□□□ -1.68
RPO21	YDL140C	DPS1	P04802	557 aa	Known RBP	4.54	□□□□□ -1.68
RPO21	YDL140C	GRX1	P25373	110 aa	Known RBP	4.54	□□□□□ -1.68
RPO21	YDL140C	YMR074C	Q04773	145 aa		4.54	□□□□□ -1.68
RPO21	YDL140C	ESF1	Q06344	628 aa	Known RBP	4.54	□□□□□ -1.68
RPO21	YDL140C	MON2	P48563	1636 aa	Predicted RBP	4.54	□□□□□ -1.68
RPO21	YDL140C	NBL1	Q3E7Y6	73 aa		4.53	□□□□□ -1.68
RPO21	YDL140C	RAD9	P14737	1309 aa		4.53	□□□□□ -1.68
RPO21	YDL140C	SRC1	Q03707	834 aa		4.53	□□□□□ -1.68
RPO21	YDL140C	YAH1	Q12184	172 aa	Known RBP	4.53	□□□□□ -1.68
RPO21	YDL140C	CTT1	P06115	562 aa		4.53	□□□□□ -1.68
RPO21	YDL140C	BUD2	P33314	1104 aa		4.53	□□□□□ -1.68
RPO21	YDL140C	MTR4	P47047	1073 aa	Known RBP	4.53	□□□□□ -1.68
RPO21	YDL140C	GPT2	P36148	743 aa		4.52	□□□□□ -1.69
RPO21	YDL140C	ECM16	Q04217	1267 aa	Known RBP	4.52	□□□□□ -1.69
RPO21	YDL140C	RPN1	P38764	993 aa	Known RBP	4.52	□□□□□ -1.69
RPO21	YDL140C	IOC3	P43596	787 aa		4.52	□□□□□ -1.69
RPO21	YDL140C	AAD16	Q02895	342 aa		4.52	□□□□□ -1.69
RPO21	YDL140C	RAD54	P32863	898 aa		4.52	□□□□□ -1.69
RPO21	YDL140C	UBP10	P53874	792 aa	Predicted RBP	4.52	□□□□□ -1.69
RPO21	YDL140C	VPS64	Q03944	604 aa		4.51	□□□□□ -1.69
RPO21	YDL140C	RAD2	P07276	1031 aa		4.51	□□□□□ -1.69
RPO21	YDL140C	PSK1	P31374	1356 aa		4.51	□□□□□ -1.69
RPO21	YDL140C	YKL023W	P36103	277 aa	Known RBP	4.51	□□□□□ -1.69
RPO21	YDL140C	SLN1	P39928	1220 aa	Predicted RBP	4.51	□□□□□ -1.69
RPO21	YDL140C	ALT2	P52892	507 aa		4.51	□□□□□ -1.69
RPO21	YDL140C	MRD1	Q06106	887 aa	Known RBP	4.51	□□□□□ -1.69
RPO21	YDL140C	BDF1	P35817	686 aa		4.51	□□□□□ -1.69
RPO21	YDL140C	IPL1	P38991	367 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	STM1	P39015	273 aa	Known RBP	4.5	□□□□□ -1.69
RPO21	YDL140C	ISW2	Q08773	1120 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	JJJ2	P46997	583 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	MET5	P47169	1442 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	MPC54	Q08550	464 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	NUP159	P40477	1460 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	VAB2	P40003	282 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	SMC3	P47037	1230 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	UFD4	P33202	1483 aa		4.5	□□□□□ -1.69
RPO21	YDL140C	MSC7	P38694	644 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	TPM2	P40414	161 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.49	□□□□□ -1.69	not detected
RPO21	YDL140C	KIP3	P53086	805 aa	Known RBP	4.49	□□□□□ -1.69
RPO21	YDL140C	SSP2	Q08646	371 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	PUP2	P32379	260 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	RAT1	Q02792	1006 aa	Known RBP	4.49	□□□□□ -1.69
RPO21	YDL140C	SPE2	P21182	396 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	MNR2	P35724	969 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	BDP1	P46678	594 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	YKL222C	P35995	705 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	TPS3	P38426	1054 aa	Known RBP	4.49	□□□□□ -1.69
RPO21	YDL140C	LYS14	P40971	790 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	DOS2	P54858	310 aa		4.49	□□□□□ -1.69
RPO21	YDL140C	YDR341C	Q05506	607 aa	Known RBP	4.49	□□□□□ -1.69
RPO21	YDL140C	UTP13	Q05946	817 aa	Known RBP	4.49	□□□□□ -1.69
RPO21	YDL140C	RPN8	Q08723	338 aa	Known RBP	4.49	□□□□□ -1.69
RPO21	YDL140C	SAS3	P34218	831 aa		4.48	□□□□□ -1.69
RPO21	YDL140C	YKR023W	P36119	530 aa	Known RBP	4.48	□□□□□ -1.69
RPO21	YDL140C	YBL086C	P38177	466 aa		4.48	□□□□□ -1.69
RPO21	YDL140C	CWC15	Q03772	175 aa	Known RBP	4.48	□□□□□ -1.69
RPO21	YDL140C	PSH1	Q12161	406 aa		4.48	□□□□□ -1.69
RPO21	YDL140C	TRM3	Q07527	1436 aa		4.47	□□□□□ -1.69
RPO21	YDL140C	VPS35	P34110	944 aa		4.47	□□□□□ -1.69
RPO21	YDL140C	EAR1	Q03212	550 aa		4.47	□□□□□ -1.69
RPO21	YDL140C	LPD1	P09624	499 aa	Known RBP	4.47	□□□□□ -1.69
RPO21	YDL140C	PIP2	P52960	996 aa		4.47	□□□□□ -1.69
RPO21	YDL140C	STU1	P38198	1513 aa		4.47	□□□□□ -1.69
RPO21	YDL140C	SSA1	P10591	642 aa	Known RBP	4.47	□□□□□ -1.69
RPO21	YDL140C	XKS1	P42826	600 aa		4.47	□□□□□ -1.69
RPO21	YDL140C	MMS22	Q06164	1454 aa		4.47	□□□□□ -1.69
RPO21	YDL140C	PES4	P39684	611 aa		4.46	□□□□□ -1.69
RPO21	YDL140C	RTR1	P40084	226 aa	Predicted RBP	4.46	□□□□□ -1.69
RPO21	YDL140C	HSP104	P31539	908 aa	Known RBP	4.46	□□□□□ -1.7
RPO21	YDL140C	CAB1	Q04430	367 aa		4.46	□□□□□ -1.7
RPO21	YDL140C	CFT2	Q12102	859 aa	Predicted RBP	4.46	□□□□□ -1.7
RPO21	YDL140C	TIF6	Q12522	245 aa	Known RBP	4.46	□□□□□ -1.7
RPO21	YDL140C	LSB1	P53281	241 aa		4.46	□□□□□ -1.7
RPO21	YDL140C	YLH47	Q06493	454 aa		4.46	□□□□□ -1.7
RPO21	YDL140C	SRS2	P12954	1174 aa		4.46	□□□□□ -1.7
RPO21	YDL140C	POL30	P15873	258 aa	Known RBP	4.46	□□□□□ -1.7
RPO21	YDL140C	MPP10	P47083	593 aa	Known RBP	4.46	□□□□□ -1.7
RPO21	YDL140C	YNR029C	P53729	429 aa	Known RBP	4.46	□□□□□ -1.7
RPO21	YDL140C	CTF4	Q01454	927 aa		4.46	□□□□□ -1.7
RPO21	YDL140C	TIM50	Q02776	476 aa		4.46	□□□□□ -1.7
RPO21	YDL140C	YDL129W	Q07555	291 aa		4.46	□□□□□ -1.7
RPO21	YDL140C	RPS9A	O13516	197 aa	Known RBP	4.45	□□□□□ -1.7
RPO21	YDL140C	ALG2	P43636	503 aa		4.45	□□□□□ -1.7
RPO21	YDL140C	MDS3	P53094	1487 aa		4.45	□□□□□ -1.7
RPO21	YDL140C	SPT2	P06843	333 aa	Predicted RBP	4.45	□□□□□ -1.7
RPO21	YDL140C	GLC3	P32775	704 aa		4.45	□□□□□ -1.7
RPO21	YDL140C	ARP5	P53946	755 aa		4.45	□□□□□ -1.7
RPO21	YDL140C	TFC8	Q12308	588 aa		4.45	□□□□□ -1.7
RPO21	YDL140C	YKU70	P32807	602 aa		4.45	□□□□□ -1.7
RPO21	YDL140C	VHR2	P40041	505 aa		4.45	□□□□□ -1.7
RPO21	YDL140C	YPK9	Q12697	1472 aa		4.44	□□□□□ -1.7
RPO21	YDL140C	RRT6	P53117	311 aa	Predicted RBP	4.44	□□□□□ -1.7
RPO21	YDL140C	GAS4	Q08271	471 aa		4.44	□□□□□ -1.7
RPO21	YDL140C	TAF10	Q12030	206 aa		4.44	□□□□□ -1.7
RPO21	YDL140C	EAF7	P53911	425 aa	Known RBP	4.44	□□□□□ -1.7
RPO21	YDL140C	SGD1	Q06132	899 aa		4.44	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms