RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	ALF1	P53904	254 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	RSM10	Q03201	203 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	ARX1	Q03862	593 aa	Known RBP	4.86	□□□□□ -1.63
VPS29	YHR012W	EMI1	Q04406	187 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	ARP9	Q05123	467 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	YOR389W	Q08912	624 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	YPL278C	Q08990	100 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	YDR018C	Q12185	396 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	GTT2	Q12390	233 aa		4.86	□□□□□ -1.63
VPS29	YHR012W	ERG11	P10614	530 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	CLN1	P20437	546 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	VAN1	P23642	535 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	HOG1	P32485	435 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	SRB4	P32569	687 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	AIM26	P32858	118 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	IMP3	P32899	183 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS29	YHR012W	CNS1	P33313	385 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	PRP18	P33411	251 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS29	YHR012W	IRS4	P36115	615 aa	Known RBP	4.85	□□□□□ -1.63
VPS29	YHR012W	SAW1	P39735	261 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	PTI1	P39927	425 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS29	YHR012W	LCP5	P40079	357 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS29	YHR012W	IRR1	P40541	1150 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	YJL107C	P42947	387 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	BRO1	P48582	844 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	SAP4	P53036	818 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	SOV1	Q04748	898 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	VID22	Q05934	901 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	BLS1	Q06071	122 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	GRS2	Q06817	618 aa		4.85	□□□□□ -1.63
VPS29	YHR012W	FAP7	Q12055	197 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS29	YHR012W	GCN1	P33892	2672 aa	Known RBP	4.85	□□□□□ -1.63
VPS29	YHR012W	PRP8	P33334	2413 aa	Known RBP	4.84	□□□□□ -1.63
VPS29	YHR012W	QCR6	P00127	147 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	MPH2	P0CD99	609 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	GLN4	P13188	809 aa	Known RBP	4.84	□□□□□ -1.63
VPS29	YHR012W	PTP1	P25044	335 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	TAF14	P35189	244 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	MPE1	P35728	441 aa	Known RBP	4.84	□□□□□ -1.63
VPS29	YHR012W	KES1	P35844	434 aa	Known RBP	4.84	□□□□□ -1.63
VPS29	YHR012W	RCK2	P38623	610 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	TCD1	P38756	429 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	PCL5	P38794	229 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	FAU1	P40099	211 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	IME4	P41833	600 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	SSU1	P41930	458 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	BTN2	P53286	410 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	YPR003C	P53394	754 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	ZRG17	P53735	605 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	CTR9	P89105	1077 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	NUP100	Q02629	959 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	YDR109C	Q04585	715 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	RRN11	Q04712	507 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	VTA1	Q06263	330 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	YDR262W	Q12331	272 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	YOR012W	Q12351	137 aa		4.84	□□□□□ -1.63
VPS29	YHR012W	INO1	P11986	533 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	HSP60	P19882	572 aa	Known RBP	4.83	□□□□□ -1.64
VPS29	YHR012W	NTH1	P32356	751 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	CDC13	P32797	924 aa	Known RBP	4.83	□□□□□ -1.64
VPS29	YHR012W	DOM34	P33309	386 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	EMC3	P36039	253 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	NTR2	P36118	322 aa	Predicted RBP	4.83	□□□□□ -1.64
VPS29	YHR012W	MRPL37	P36532	105 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	ARA1	P38115	344 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	DED81	P38707	554 aa	Known RBP	4.83	□□□□□ -1.64
VPS29	YHR012W	ALG8	P40351	577 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	ALA1	P40825	983 aa	Known RBP	4.83	□□□□□ -1.64
VPS29	YHR012W	PXA1	P41909	870 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	SUR7	P54003	302 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
VPS29	YHR012W	YDR132C	Q03900	495 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	NUT2	Q06213	157 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	TDA6	Q06466	467 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	BSC6	Q08280	497 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	HRK1	Q08732	759 aa	Known RBP	4.83	□□□□□ -1.64
VPS29	YHR012W	SMF3	Q12078	473 aa	Predicted RBP	4.83	□□□□□ -1.64
VPS29	YHR012W	LDB17	Q12342	491 aa		4.83	□□□□□ -1.64
VPS29	YHR012W	STE6	P12866	1290 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	CKI1	P20485	582 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	RRP43	P25359	394 aa	Predicted RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	PET309	P32522	965 aa	Predicted RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	UTR2	P32623	467 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	LDB7	P38210	180 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	MCX1	P38323	520 aa	Predicted RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	YHR033W	P38690	423 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	SMF2	P38778	549 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	GIM4	P40005	111 aa	Known RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	YMR134W	P40207	237 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	DPH1	P40487	425 aa	Known RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	TES1	P41903	349 aa	Known RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	RTA1	P53047	317 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	RHO3	Q00245	231 aa	Known RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	SLU7	Q02775	382 aa	Known RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	MTG1	Q03151	367 aa	Predicted RBP	4.82	□□□□□ -1.64
VPS29	YHR012W	RCO1	Q04779	684 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	AVL9	Q12500	764 aa		4.82	□□□□□ -1.64
VPS29	YHR012W	RPP2B	P02400	110 aa	Known RBP	4.81	□□□□□ -1.64
VPS29	YHR012W	LAT1	P12695	482 aa	Known RBP	4.81	□□□□□ -1.64
VPS29	YHR012W	RAD57	P25301	460 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms