RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	TY2A-C	P25383	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	KRE2	P27809	442 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	MRPL7	P36519	292 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	NOP4	P37838	685 aa	Known RBP	4.12	□□□□□ -1.75
UBX5	YDR330W	THI6	P41835	540 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	RBG2	P53295	368 aa	Known RBP	4.12	□□□□□ -1.75
UBX5	YDR330W	RPT4	P53549	437 aa	Known RBP	4.12	□□□□□ -1.75
UBX5	YDR330W	CSL4	P53859	292 aa	Predicted RBP	4.12	□□□□□ -1.75
UBX5	YDR330W	IRC4	Q03036	179 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-DR2	Q03483	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	CRF1	Q04930	467 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	MLH3	Q12083	715 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-B	Q12260	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-OR2	Q12293	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-DR1	Q12392	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-OR1	Q12439	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	ERP4	Q12450	207 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	PCD1	Q12524	340 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	TY2A-DR3	Q99303	438 aa		4.12	□□□□□ -1.75
UBX5	YDR330W	CHO2	P05374	869 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	PPR1	P07272	904 aa	Predicted RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	YCR061W	P25639	631 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	CMK1	P27466	446 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	HRR25	P29295	494 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	ELF1	P36053	145 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	MIC60	P36112	540 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	MRPL10	P36520	322 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	APL3	P38065	1025 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	LNP1	P38878	278 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	LYS14	P40971	790 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	EPL1	P43572	832 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	ASE1	P50275	885 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	RPS15	Q01855	142 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	MFM1	Q02783	413 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	IRC3	Q06683	689 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	USV1	Q12132	391 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	TRM13	Q12383	476 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	HSP82	P02829	709 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	GPA1	P08539	472 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	SPO16	P17122	198 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	PRE8	P23639	250 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	HCM1	P25364	564 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	SAC6	P32599	642 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	PTK1	P36002	662 aa	Predicted RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	RFT1	P38206	574 aa	Predicted RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	PFF1	P38244	976 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	SDH8	P38345	138 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	YER130C	P39959	443 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	YIL161W	P40449	235 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	YFH7	P43591	353 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	ARC1	P46672	376 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	YPT11	P48559	417 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	YGR151C	P53287	111 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	DAK1	P54838	584 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	MTG1	Q03151	367 aa	Predicted RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	UFO1	Q04511	668 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	RCO1	Q04779	684 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	YPL216W	Q08964	1102 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	NUS1	Q12063	375 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	ERG27	Q12452	347 aa	Known RBP	4.11	□□□□□ -1.75
UBX5	YDR330W	YOR111W	Q99210	232 aa		4.11	□□□□□ -1.75
UBX5	YDR330W	CDC24	P11433	854 aa	Predicted RBP	4.1	□□□□□ -1.75
UBX5	YDR330W	PDE1	P22434	369 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	ANP1	P32629	500 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	LOT5	P34234	306 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	BMH2	P34730	273 aa	Known RBP	4.1	□□□□□ -1.75
UBX5	YDR330W	MYO3	P36006	1272 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	UBS1	P38290	277 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	SUL1	P38359	859 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	YHR097C	P38809	366 aa	Known RBP	4.1	□□□□□ -1.75
UBX5	YDR330W	PHO23	P50947	330 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	VPS4	P52917	437 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	TAM41	P53230	385 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	DIP5	P53388	608 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	SSL2	Q00578	843 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	TDA9	Q04545	1251 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	TGS1	Q12052	315 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	HUA2	Q12134	243 aa		4.1	□□□□□ -1.75
UBX5	YDR330W	PNO1	Q99216	274 aa	Known RBP	4.1	□□□□□ -1.75
UBX5	YDR330W	RPB2	P08518	1224 aa	Known RBP	4.09	□□□□□ -1.75
UBX5	YDR330W	SNF3	P10870	884 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	RNQ1	P25367	405 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	PGS1	P25578	521 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	MRP20	P32387	263 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	THI80	P35202	319 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	EBP2	P36049	427 aa	Known RBP	4.09	□□□□□ -1.75
UBX5	YDR330W	CCL1	P37366	393 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	RTS1	P38903	757 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	YJL206C	P39529	758 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	VTC2	P43585	828 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	SGM1	P47166	707 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	ATG4	P53867	494 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	REG1	Q00816	1014 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	ERO1	Q03103	563 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	USA1	Q03714	838 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	UBX2	Q04228	584 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	YLR040C	Q07988	224 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	TMA16	Q08687	178 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	RKI1	Q12189	258 aa		4.09	□□□□□ -1.75
UBX5	YDR330W	NTO1	Q12311	748 aa		4.09	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 151.6 ms