RNA–Protein interactions for RNA: YDL216C

RRI1, Transcript of Catalytic subunit of the COP9 signalosome (CSN) complex, yeast

Gene RRI1, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRI1	YDL216C	RPN11	P43588	306 aa	Known RBP	4.69	□□□□□ -1.66
RRI1	YDL216C	BNA1	P47096	177 aa		4.69	□□□□□ -1.66
RRI1	YDL216C	VPS4	P52917	437 aa		4.69	□□□□□ -1.66
RRI1	YDL216C	RRT6	P53117	311 aa	Predicted RBP	4.69	□□□□□ -1.66
RRI1	YDL216C	EAF7	P53911	425 aa	Known RBP	4.69	□□□□□ -1.66
RRI1	YDL216C	FCP1	Q03254	732 aa		4.69	□□□□□ -1.66
RRI1	YDL216C	SWF1	Q04629	336 aa		4.69	□□□□□ -1.66
RRI1	YDL216C	ECM22	Q05958	814 aa	Predicted RBP	4.69	□□□□□ -1.66
RRI1	YDL216C	YLR455W	Q06188	304 aa		4.69	□□□□□ -1.66
RRI1	YDL216C	VCX1	Q99385	411 aa		4.69	□□□□□ -1.66
RRI1	YDL216C	YLR302C	O13544	120 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	TRX2	P22803	104 aa	Known RBP	4.68	□□□□□ -1.66
RRI1	YDL216C	AIM17	P23180	465 aa	Known RBP	4.68	□□□□□ -1.66
RRI1	YDL216C	YCR006C	P25350	157 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	MGM1	P32266	881 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	ADE17	P38009	592 aa	Known RBP	4.68	□□□□□ -1.66
RRI1	YDL216C	SCO2	P38072	301 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	UBP13	P38187	747 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	SCW4	P53334	386 aa	Known RBP	4.68	□□□□□ -1.66
RRI1	YDL216C	GEP3	Q08622	556 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	TRM8	Q12009	286 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	NUS1	Q12063	375 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	ATX2	Q12067	313 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	HER1	Q12276	1246 aa		4.68	□□□□□ -1.66
RRI1	YDL216C	YPT11	P48559	417 aa		4.67	□□□□□ -1.66
RRI1	YDL216C	MPS1	P54199	764 aa		4.67	□□□□□ -1.66
RRI1	YDL216C	RPL15B	P54780	204 aa	Predicted RBP	4.67	□□□□□ -1.66
RRI1	YDL216C	REG1	Q00816	1014 aa		4.67	□□□□□ -1.66
RRI1	YDL216C	YML131W	Q03102	365 aa		4.67	□□□□□ -1.66
RRI1	YDL216C	RCO1	Q04779	684 aa		4.67	□□□□□ -1.66
RRI1	YDL216C	NEW1	Q08972	1196 aa	Known RBP	4.67	□□□□□ -1.66
RRI1	YDL216C	NBP2	Q12163	236 aa		4.67	□□□□□ -1.66
RRI1	YDL216C	GPA1	P08539	472 aa		4.66	□□□□□ -1.66
RRI1	YDL216C	ERG8	P24521	451 aa		4.66	□□□□□ -1.66
RRI1	YDL216C	VPS41	P38959	992 aa		4.66	□□□□□ -1.66
RRI1	YDL216C	YER010C	P40011	234 aa		4.66	□□□□□ -1.66
RRI1	YDL216C	SWP82	P43554	623 aa		4.66	□□□□□ -1.66
RRI1	YDL216C	CTK2	P46962	323 aa		4.66	□□□□□ -1.66
RRI1	YDL216C	RSM28	Q03430	361 aa		4.66	□□□□□ -1.66
RRI1	YDL216C	YCP4	P25349	247 aa	Known RBP	4.65	□□□□□ -1.67
RRI1	YDL216C	RRN3	P36070	627 aa		4.65	□□□□□ -1.67
RRI1	YDL216C	MDV1	P47025	714 aa		4.65	□□□□□ -1.67
RRI1	YDL216C	VPS25	P47142	202 aa		4.65	□□□□□ -1.67
RRI1	YDL216C	IST1	P53843	298 aa	Predicted RBP	4.65	□□□□□ -1.67
RRI1	YDL216C	YPL068C	Q02749	293 aa		4.65	□□□□□ -1.67
RRI1	YDL216C	RPB2	P08518	1224 aa	Known RBP	4.64	□□□□□ -1.67
RRI1	YDL216C	GUK1	P15454	187 aa	Known RBP	4.64	□□□□□ -1.67
RRI1	YDL216C	PXL1	P36166	706 aa		4.64	□□□□□ -1.67
RRI1	YDL216C	ECM10	P39987	644 aa		4.64	□□□□□ -1.67
RRI1	YDL216C	YIR016W	P40572	265 aa		4.64	□□□□□ -1.67
RRI1	YDL216C	PFA5	Q03289	374 aa		4.64	□□□□□ -1.67
RRI1	YDL216C	CAC2	Q04199	468 aa		4.64	□□□□□ -1.67
RRI1	YDL216C	PSK2	Q08217	1101 aa		4.64	□□□□□ -1.67
RRI1	YDL216C	PET111	P08468	800 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	RER1	P25560	188 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	CBF2	P32504	956 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	AXL2	P38928	823 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	MUB1	Q03162	620 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	OPY2	Q06810	360 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	SSP2	Q08646	371 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	FRE3	Q08905	711 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	UBX3	Q12229	455 aa		4.63	□□□□□ -1.67
RRI1	YDL216C	YER145C-A	A0A023PYF4	145 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	YPT1	P01123	206 aa	Known RBP	4.62	□□□□□ -1.67
RRI1	YDL216C	HXK2	P04807	486 aa	Known RBP	4.62	□□□□□ -1.67
RRI1	YDL216C	RAP1	P11938	827 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	STE50	P25344	346 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	SAC1	P32368	623 aa	Known RBP	4.62	□□□□□ -1.67
RRI1	YDL216C	PSD1	P39006	500 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	IRC8	P47046	822 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	YGL036W	P53185	909 aa	Predicted RBP	4.62	□□□□□ -1.67
RRI1	YDL216C	BOP3	P53958	396 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	POS5	Q06892	414 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	GSH2	Q08220	491 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	GPN2	Q08726	347 aa	Predicted RBP	4.62	□□□□□ -1.67
RRI1	YDL216C	YOR019W	Q99248	730 aa		4.62	□□□□□ -1.67
RRI1	YDL216C	YBR085C-A	O43137	85 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	SSH4	P32343	579 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	MRP20	P32387	263 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	ESL2	P36168	1195 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	IME4	P41833	600 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	SNO4	Q04902	237 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	HSP33	Q08914	237 aa	Known RBP	4.61	□□□□□ -1.67
RRI1	YDL216C	HSP32	Q08992	237 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	YOL087C	Q99247	1116 aa		4.61	□□□□□ -1.67
RRI1	YDL216C	CHO1	P08456	276 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	TKL1	P23254	680 aa	Known RBP	4.6	□□□□□ -1.67
RRI1	YDL216C	GND1	P38720	489 aa	Known RBP	4.6	□□□□□ -1.67
RRI1	YDL216C	SLZ1	P40167	298 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	PKP1	P40530	394 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	SMC3	P47037	1230 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	YNR061C	P53747	219 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	CBK1	P53894	756 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	ASI1	P54074	624 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	YMR018W	Q04364	514 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	ECI1	Q05871	280 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	DSE3	Q08729	430 aa		4.6	□□□□□ -1.67
RRI1	YDL216C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
RRI1	YDL216C	KRS1	P15180	591 aa	Known RBP	4.59	□□□□□ -1.67
RRI1	YDL216C	ATO2	P32907	282 aa		4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms