RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	ATO2	P32907	282 aa		5.02	□□□□□ -1.61
UBS1	YBR165W	GEX2	P36173	615 aa		5.02	□□□□□ -1.61
UBS1	YBR165W	GND1	P38720	489 aa	Known RBP	5.02	□□□□□ -1.61
UBS1	YBR165W	VPS41	P38959	992 aa		5.02	□□□□□ -1.61
UBS1	YBR165W	SCS3	P53012	380 aa		5.02	□□□□□ -1.61
UBS1	YBR165W	ECM22	Q05958	814 aa	Predicted RBP	5.02	□□□□□ -1.61
UBS1	YBR165W	SRL1	Q08673	210 aa		5.02	□□□□□ -1.61
UBS1	YBR165W	UBX3	Q12229	455 aa		5.02	□□□□□ -1.61
UBS1	YBR165W	GCD7	P32502	381 aa	Predicted RBP	5.01	□□□□□ -1.61
UBS1	YBR165W	YPT11	P48559	417 aa		5.01	□□□□□ -1.61
UBS1	YBR165W	LSC1	P53598	329 aa	Known RBP	5.01	□□□□□ -1.61
UBS1	YBR165W	TRS130	Q03660	1102 aa		5.01	□□□□□ -1.61
UBS1	YBR165W	NUP53	Q03790	475 aa		5.01	□□□□□ -1.61
UBS1	YBR165W	VAM6	Q07468	1049 aa		5.01	□□□□□ -1.61
UBS1	YBR165W	NYV1	Q12255	253 aa		5.01	□□□□□ -1.61
UBS1	YBR165W	CLB4	P24871	460 aa		5	□□□□□ -1.61
UBS1	YBR165W	YSP3	P25036	478 aa		5	□□□□□ -1.61
UBS1	YBR165W	RFA2	P26754	273 aa	Known RBP	5	□□□□□ -1.61
UBS1	YBR165W	RPT2	P40327	437 aa	Known RBP	5	□□□□□ -1.61
UBS1	YBR165W	YIL152W	P40455	235 aa		5	□□□□□ -1.61
UBS1	YBR165W	YIR016W	P40572	265 aa		5	□□□□□ -1.61
UBS1	YBR165W	ZAP1	P47043	880 aa		5	□□□□□ -1.61
UBS1	YBR165W	BOP3	P53958	396 aa		5	□□□□□ -1.61
UBS1	YBR165W	MCH4	Q08268	501 aa		5	□□□□□ -1.61
UBS1	YBR165W	SCO2	P38072	301 aa		4.99	□□□□□ -1.61
UBS1	YBR165W	EXO84	P38261	753 aa		4.99	□□□□□ -1.61
UBS1	YBR165W	STB2	P46679	850 aa		4.99	□□□□□ -1.61
UBS1	YBR165W	YNL144C	P53907	740 aa		4.99	□□□□□ -1.61
UBS1	YBR165W	ADE16	P54113	591 aa	Known RBP	4.99	□□□□□ -1.61
UBS1	YBR165W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
UBS1	YBR165W	YEF3	P16521	1044 aa	Known RBP	4.98	□□□□□ -1.61
UBS1	YBR165W	ACA1	P39970	489 aa		4.98	□□□□□ -1.61
UBS1	YBR165W	ASG1	P40467	964 aa		4.98	□□□□□ -1.61
UBS1	YBR165W	CAC2	Q04199	468 aa		4.98	□□□□□ -1.61
UBS1	YBR165W	SWT1	Q12104	458 aa		4.98	□□□□□ -1.61
UBS1	YBR165W	NCP1	P16603	691 aa	Known RBP	4.97	□□□□□ -1.61
UBS1	YBR165W	PHO81	P17442	1178 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	NPR3	P38742	1146 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	FAF1	P40546	346 aa	Predicted RBP	4.97	□□□□□ -1.61
UBS1	YBR165W	MEP2	P41948	499 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	ERR3	P42222	437 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	UBP8	P50102	471 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	DCP2	P53550	970 aa	Known RBP	4.97	□□□□□ -1.61
UBS1	YBR165W	SWF1	Q04629	336 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	CIA1	Q05583	330 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	STP3	Q05937	343 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	YLR455W	Q06188	304 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	SNA4	Q07549	140 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	MLH2	Q07980	695 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	GSH2	Q08220	491 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	DSE3	Q08729	430 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	BUD7	Q08754	746 aa		4.97	□□□□□ -1.61
UBS1	YBR165W	GPA1	P08539	472 aa		4.96	□□□□□ -1.62
UBS1	YBR165W	MRP2	P10663	115 aa	Predicted RBP	4.96	□□□□□ -1.62
UBS1	YBR165W	SPO16	P17122	198 aa		4.96	□□□□□ -1.62
UBS1	YBR165W	YCL049C	P25577	312 aa		4.96	□□□□□ -1.62
UBS1	YBR165W	YOL057W	Q08225	711 aa		4.96	□□□□□ -1.62
UBS1	YBR165W	SUI3	P09064	285 aa	Known RBP	4.95	□□□□□ -1.62
UBS1	YBR165W	SRP54	P20424	541 aa	Known RBP	4.95	□□□□□ -1.62
UBS1	YBR165W	MSM1	P22438	575 aa		4.95	□□□□□ -1.62
UBS1	YBR165W	YCR006C	P25350	157 aa		4.95	□□□□□ -1.62
UBS1	YBR165W	CSL4	P53859	292 aa	Predicted RBP	4.95	□□□□□ -1.62
UBS1	YBR165W	UBX4	P54730	416 aa		4.95	□□□□□ -1.62
UBS1	YBR165W	FRE3	Q08905	711 aa		4.95	□□□□□ -1.62
UBS1	YBR165W	YFL068W	P0CX99	160 aa		4.94	□□□□□ -1.62
UBS1	YBR165W	YLL066W-A	P0CY00	160 aa		4.94	□□□□□ -1.62
UBS1	YBR165W	YLL067W-A	P0CY01	160 aa		4.94	□□□□□ -1.62
UBS1	YBR165W	NUP120	P35729	1037 aa		4.94	□□□□□ -1.62
UBS1	YBR165W	YIL161W	P40449	235 aa	Known RBP	4.94	□□□□□ -1.62
UBS1	YBR165W	VPS25	P47142	202 aa		4.94	□□□□□ -1.62
UBS1	YBR165W	SWA2	Q06677	668 aa		4.94	□□□□□ -1.62
UBS1	YBR165W	ATP2	P00830	511 aa	Known RBP	4.93	□□□□□ -1.62
UBS1	YBR165W	MTF2	P10849	440 aa		4.93	□□□□□ -1.62
UBS1	YBR165W	YCR043C	P25361	127 aa		4.93	□□□□□ -1.62
UBS1	YBR165W	ARC40	P38328	384 aa	Known RBP	4.93	□□□□□ -1.62
UBS1	YBR165W	PCL6	P40038	420 aa		4.93	□□□□□ -1.62
UBS1	YBR165W	YGL036W	P53185	909 aa	Predicted RBP	4.93	□□□□□ -1.62
UBS1	YBR165W	ARC35	P53731	342 aa	Known RBP	4.93	□□□□□ -1.62
UBS1	YBR165W	POS5	Q06892	414 aa		4.93	□□□□□ -1.62
UBS1	YBR165W	MRPL36	P36531	177 aa		4.92	□□□□□ -1.62
UBS1	YBR165W	TES1	P41903	349 aa	Known RBP	4.92	□□□□□ -1.62
UBS1	YBR165W	YER145C-A	A0A023PYF4	145 aa		4.91	□□□□□ -1.62
UBS1	YBR165W	RPL42A	P0CX27	106 aa	Known RBP	4.91	□□□□□ -1.62
UBS1	YBR165W	RPL42B	P0CX28	106 aa	Known RBP	4.91	□□□□□ -1.62
UBS1	YBR165W	APA1	P16550	321 aa	Known RBP	4.91	□□□□□ -1.62
UBS1	YBR165W	AAP1	P37898	856 aa	Known RBP	4.91	□□□□□ -1.62
UBS1	YBR165W	ADE17	P38009	592 aa	Known RBP	4.91	□□□□□ -1.62
UBS1	YBR165W	UBP13	P38187	747 aa		4.91	□□□□□ -1.62
UBS1	YBR165W	PSF2	P40359	213 aa		4.91	□□□□□ -1.62
UBS1	YBR165W	RPN11	P43588	306 aa	Known RBP	4.91	□□□□□ -1.62
UBS1	YBR165W	YMR034C	Q05131	434 aa	Predicted RBP	4.91	□□□□□ -1.62
UBS1	YBR165W	TFC6	Q06339	672 aa		4.91	□□□□□ -1.62
UBS1	YBR165W	YLR049C	Q12110	428 aa		4.91	□□□□□ -1.62
UBS1	YBR165W	YLR112W	Q12130	139 aa		4.91	□□□□□ -1.62
UBS1	YBR165W	PGI1	P12709	554 aa	Known RBP	4.9	□□□□□ -1.63
UBS1	YBR165W	STE50	P25344	346 aa		4.9	□□□□□ -1.63
UBS1	YBR165W	ASE1	P50275	885 aa		4.9	□□□□□ -1.63
UBS1	YBR165W	MRPL13	Q02204	264 aa		4.9	□□□□□ -1.63
UBS1	YBR165W	ARP9	Q05123	467 aa		4.9	□□□□□ -1.63
UBS1	YBR165W	ECI1	Q05871	280 aa		4.9	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 247.5 ms