RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	RPS17A	P02407	136 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	RPC40	P07703	335 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	BIK1	P11709	440 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RPS17B	P14127	136 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	SUI2	P20459	304 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
PUB1	YNL016W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
PUB1	YNL016W	DGR2	P32330	852 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RPC82	P32349	654 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	TFB1	P32776	642 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RIB7	P33312	244 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	DEF1	P35732	738 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	PTK1	P36002	662 aa	Predicted RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	YHR131C	P38835	850 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RTT105	P40063	208 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YIR042C	P40586	236 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SKP2	P42843	763 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YFL052W	P43551	465 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	ARC1	P46672	376 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	MNT2	P53059	558 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SGF73	P53165	657 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YGR045C	P53229	120 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	HST1	P53685	503 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	HDA1	P53973	706 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	HEF3	P53978	1044 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	YSA1	Q01976	231 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RAD33	Q04231	177 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	MLH2	Q07980	695 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	CIR2	Q08822	631 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	KEL3	Q08979	651 aa	Predicted RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	TGL5	Q12043	749 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SKM1	Q12469	655 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	AI3	P03877	415 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SEC53	P07283	254 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	APE1	P14904	514 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	THR1	P17423	357 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	SNF5	P18480	905 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	APN1	P22936	367 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SWI4	P25302	1093 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	SED4	P25365	1065 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	OCA4	P25366	362 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RNQ1	P25367	405 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SPB1	P25582	841 aa	Predicted RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	YCR015C	P25616	317 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
PUB1	YNL016W	FLR1	P38124	548 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	FLC2	P39719	783 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	FMP10	P40098	244 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YJR061W	P40355	935 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	PRK1	P40494	810 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	LCB2	P40970	561 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SHR5	P41912	237 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YFL054C	P43549	646 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	MRX6	P48564	524 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YNR061C	P53747	219 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YNR071C	P53757	342 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	ELA1	P53861	379 aa	Predicted RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	SFB2	P53953	876 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RPT6	Q01939	405 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	AIM32	Q04689	311 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	RNH1	Q04740	348 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	CRR1	Q05790	422 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	YLR407W	Q06070	228 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	AVO1	Q08236	1176 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	APL5	Q08951	932 aa	Known RBP	4.14	□□□□□ -1.75
PUB1	YNL016W	PCL8	Q08966	492 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	APL4	Q12028	832 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	NMD4	Q12129	218 aa		4.14	□□□□□ -1.75
PUB1	YNL016W	SUI3	P09064	285 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	PWP1	P21304	576 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	RFA1	P22336	621 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	DAL80	P26343	269 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	RAD24	P32641	659 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	BCS1	P32839	456 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	KSP1	P38691	1029 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	FSH1	P38777	243 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	BST1	P43571	1029 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	YJL055W	P47044	245 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	FOL2	P51601	243 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	ALT1	P52893	592 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	ERV25	P54837	211 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	GPD1	Q00055	391 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	OAZ1	Q02803	292 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	YPL107W	Q02873	248 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	FDC1	Q03034	503 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	DPB4	Q04603	196 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	ERB1	Q04660	807 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	RSF1	Q05043	376 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	INM2	Q05533	292 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	ECM22	Q05958	814 aa	Predicted RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	SWA2	Q06677	668 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	YDL073W	Q07454	984 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	AAD4	Q07747	329 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
PUB1	YNL016W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
PUB1	YNL016W	APC5	Q08683	685 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	ALG6	Q12001	544 aa	Known RBP	4.13	□□□□□ -1.75
PUB1	YNL016W	FRE6	Q12473	712 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	YBR126W-A	Q8TGU7	68 aa		4.13	□□□□□ -1.75
PUB1	YNL016W	ADE3	P07245	946 aa	Known RBP	4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 10.9 ms