Protein–RNA interactions for Protein: P35732

DEF1, RNA polymerase II degradation factor 1, yeastyeast

Known RBP Predictions only

Length 738 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
DEF1P35732 YML009W-BYML009W-B 477 nt19.95■□□□□ 0.78
DEF1P35732 NSR1YGR159C 1245 nt19.82■□□□□ 0.76
DEF1P35732 NOP1YDL014W 984 nt19.46■□□□□ 0.71
DEF1P35732 YKL036CYKL036C 393 nt18.02■□□□□ 0.48
DEF1P35732 MDJ1YFL016C 1536 nt17.49■□□□□ 0.39
DEF1P35732 SSA3YBL075C 1950 nt17.26■□□□□ 0.35
DEF1P35732 Q0297Q0297 156 nt17.09■□□□□ 0.33
DEF1P35732 SRX1YKL086W 384 nt17.02■□□□□ 0.32
DEF1P35732 YJL027CYJL027C 417 nt16.81■□□□□ 0.28
DEF1P35732 SCS3YGL126W 1143 nt16.43■□□□□ 0.22
DEF1P35732 YCR051WYCR051W 669 nt16.1■□□□□ 0.17
DEF1P35732 YOL085CYOL085C 342 nt15.61■□□□□ 0.09
DEF1P35732 DBP2YNL112W 1641 nt15.54■□□□□ 0.08
DEF1P35732 TRN1tP(UGG)A 72 nt15.35■□□□□ 0.05
DEF1P35732 SUF9tP(UGG)F 72 nt15.35■□□□□ 0.05
DEF1P35732 SUF8tP(UGG)H 72 nt15.35■□□□□ 0.05
DEF1P35732 tP(UGG)LtP(UGG)L 72 nt15.35■□□□□ 0.05
DEF1P35732 SUF7tP(UGG)M 72 nt15.35■□□□□ 0.05
DEF1P35732 tP(UGG)N1tP(UGG)N1 72 nt15.35■□□□□ 0.05
DEF1P35732 tP(UGG)N2tP(UGG)N2 72 nt15.35■□□□□ 0.05
DEF1P35732 tP(UGG)O1tP(UGG)O1 72 nt15.35■□□□□ 0.05
DEF1P35732 SUF11tP(UGG)O2 72 nt15.35■□□□□ 0.05
DEF1P35732 RPP1BYDL130W 321 nt15.32■□□□□ 0.04
DEF1P35732 PKP1YIL042C 1185 nt15.31■□□□□ 0.04
DEF1P35732 CCC1YLR220W 969 nt15.13■□□□□ 0.01
DEF1P35732 YBR190WYBR190W 312 nt14.94□□□□□ -0.02
DEF1P35732 NVJ2YPR091C 2313 nt14.88□□□□□ -0.03
DEF1P35732 FPS1YLL043W 2010 nt14.83□□□□□ -0.03
DEF1P35732 PAC11YDR488C 1602 nt14.83□□□□□ -0.04
DEF1P35732 ATS1YAL020C 1002 nt14.72□□□□□ -0.05
DEF1P35732 SCJ1YMR214W 1134 nt14.69□□□□□ -0.06
DEF1P35732 SSA1YAL005C 1929 nt14.68□□□□□ -0.06
DEF1P35732 RVS167YDR388W 1449 nt14.6□□□□□ -0.07
DEF1P35732 PET122YER153C 765 nt14.6□□□□□ -0.07
DEF1P35732 RTC3YHR087W 336 nt14.55□□□□□ -0.08
DEF1P35732 tP(UGG)O3tP(UGG)O3 72 nt14.53□□□□□ -0.08
DEF1P35732 SCR1SCR1 522 nt14.47□□□□□ -0.09
DEF1P35732 SSA4YER103W 1929 nt14.29□□□□□ -0.12
DEF1P35732 RRN5YLR141W 1092 nt14.19□□□□□ -0.14
DEF1P35732 SHR5YOL110W 714 nt14.13□□□□□ -0.15
DEF1P35732 YDJ1YNL064C 1230 nt14.09□□□□□ -0.15
DEF1P35732 BDF1YLR399C 2061 nt14.01□□□□□ -0.17
DEF1P35732 YER088W-BYER088W-B 147 nt13.93□□□□□ -0.18
DEF1P35732 SPT5YML010W 3192 nt13.91□□□□□ -0.18
DEF1P35732 RSB1YOR049C 1065 nt13.89□□□□□ -0.19
DEF1P35732 TAT1YBR069C 1860 nt13.77□□□□□ -0.21
DEF1P35732 GAR1YHR089C 618 nt13.7□□□□□ -0.22
DEF1P35732 UME6YDR207C 2511 nt13.67□□□□□ -0.22
DEF1P35732 PUT4YOR348C 1884 nt13.67□□□□□ -0.22
DEF1P35732 URN1YPR152C 1398 nt13.67□□□□□ -0.22
DEF1P35732 DEP1YAL013W 1218 nt13.65□□□□□ -0.22
DEF1P35732 PST2YDR032C 597 nt13.64□□□□□ -0.23
DEF1P35732 RPN10YHR200W 807 nt13.5□□□□□ -0.25
DEF1P35732 OPI9YLR338W 858 nt13.49□□□□□ -0.25
DEF1P35732 YNL208WYNL208W 600 nt13.49□□□□□ -0.25
DEF1P35732 SAH1YER043C 1350 nt13.35□□□□□ -0.27
DEF1P35732 ARE1YCR048W 1833 nt13.28□□□□□ -0.28
DEF1P35732 TIR1YER011W 765 nt13.27□□□□□ -0.29
DEF1P35732 POA1YBR022W 534 nt13.15□□□□□ -0.3
DEF1P35732 BSC6YOL137W 1494 nt13.11□□□□□ -0.31
DEF1P35732 YKL097CYKL097C 411 nt13.11□□□□□ -0.31
DEF1P35732 PUN1YLR414C 792 nt13.09□□□□□ -0.31
DEF1P35732 YHR049C-AYHR049C-A 297 nt13.08□□□□□ -0.32
DEF1P35732 SHU1YHL006C 453 nt13.05□□□□□ -0.32
DEF1P35732 YJR018WYJR018W 363 nt13.05□□□□□ -0.32
DEF1P35732 YJR120WYJR120W 351 nt12.9□□□□□ -0.34
DEF1P35732 RPM1RPM1 483 nt12.9□□□□□ -0.34
DEF1P35732 PTC2YER089C 1395 nt12.89□□□□□ -0.35
DEF1P35732 SRB2YHR041C 633 nt12.88□□□□□ -0.35
DEF1P35732 MCH5YOR306C 1566 nt12.83□□□□□ -0.36
DEF1P35732 RPP2BYDR382W 333 nt12.8□□□□□ -0.36
DEF1P35732 YAL037C-BYAL037C-B 975 nt12.79□□□□□ -0.36
DEF1P35732 GUT2YIL155C 1950 nt12.77□□□□□ -0.37
DEF1P35732 BUD23YCR047C 828 nt12.76□□□□□ -0.37
DEF1P35732 BOR1YNL275W 1731 nt12.76□□□□□ -0.37
DEF1P35732 NAB2YGL122C 1578 nt12.73□□□□□ -0.37
DEF1P35732 YJL225CYJL225C 5277 nt12.72□□□□□ -0.37
DEF1P35732 WWM1YFL010C 636 nt12.68□□□□□ -0.38
DEF1P35732 YGR021WYGR021W 873 nt12.65□□□□□ -0.38
DEF1P35732 HOM6YJR139C 1080 nt12.61□□□□□ -0.39
DEF1P35732 INM2YDR287W 879 nt12.6□□□□□ -0.39
DEF1P35732 YOR139CYOR139C 393 nt12.59□□□□□ -0.39
DEF1P35732 DAL1YIR027C 1383 nt12.58□□□□□ -0.4
DEF1P35732 BDH2YAL061W 1254 nt12.58□□□□□ -0.4
DEF1P35732 FIS1YIL065C 468 nt12.57□□□□□ -0.4
DEF1P35732 MNP1YGL068W 585 nt12.53□□□□□ -0.4
DEF1P35732 YFL021C-AYFL021C-A 855 nt12.51□□□□□ -0.41
DEF1P35732 PCH2YBR186W 1695 nt12.51□□□□□ -0.41
DEF1P35732 FPR4YLR449W 1179 nt12.49□□□□□ -0.41
DEF1P35732 YBL100CYBL100C 315 nt12.47□□□□□ -0.41
DEF1P35732 PHO4YFR034C 939 nt12.45□□□□□ -0.42
DEF1P35732 LSM3YLR438C-A 270 nt12.45□□□□□ -0.42
DEF1P35732 MEP2YNL142W 1500 nt12.44□□□□□ -0.42
DEF1P35732 NPL3YDR432W 1245 nt12.44□□□□□ -0.42
DEF1P35732 RKM5YLR137W 1104 nt12.43□□□□□ -0.42
DEF1P35732 YBR220CYBR220C 1683 nt12.39□□□□□ -0.43
DEF1P35732 YOL037CYOL037C 354 nt12.39□□□□□ -0.43
DEF1P35732 FUN26YAL022C 1554 nt12.33□□□□□ -0.44
DEF1P35732 TRM9YML014W 840 nt12.31□□□□□ -0.44
DEF1P35732 ALG12YNR030W 1656 nt12.31□□□□□ -0.44
Retrieved 100 of 7,029 protein–RNA pairs in 12.5 ms