RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
EAR1	YMR171C	CWC22	P53333	577 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	RET3	P53600	189 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	BNI5	P53890	448 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	CSM3	Q04659	317 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	APL5	Q08951	932 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	CWC2	Q12046	339 aa	Predicted RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	DAS2	Q12084	232 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	TRM13	Q12383	476 aa		4.85	□□□□□ -1.63
EAR1	YMR171C	HRP1	Q99383	534 aa	Known RBP	4.85	□□□□□ -1.63
EAR1	YMR171C	JIP3	O13555	125 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	ARD1	P07347	238 aa	Predicted RBP	4.84	□□□□□ -1.63
EAR1	YMR171C	KAR1	P11927	433 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	CDC26	P14724	124 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	ATP12	P22135	325 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	PAP1	P29468	568 aa	Known RBP	4.84	□□□□□ -1.63
EAR1	YMR171C	UBC6	P33296	250 aa	Predicted RBP	4.84	□□□□□ -1.63
EAR1	YMR171C	SPP381	P38282	291 aa	Predicted RBP	4.84	□□□□□ -1.63
EAR1	YMR171C	SIP3	P38717	1229 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	THI6	P41835	540 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	LYS4	P49367	693 aa	Predicted RBP	4.84	□□□□□ -1.63
EAR1	YMR171C	SLD3	P53135	668 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	RCR2	Q03446	210 aa	Known RBP	4.84	□□□□□ -1.63
EAR1	YMR171C	DLT1	Q04216	342 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	VTI1	Q04338	217 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	YMR114C	Q04471	368 aa	Known RBP	4.84	□□□□□ -1.63
EAR1	YMR171C	PHM6	Q05637	104 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	SFH1	Q06168	426 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	IRC3	Q06683	689 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	SGO1	Q08490	590 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	SLX4	Q12098	748 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	MPD2	Q99316	277 aa		4.84	□□□□□ -1.63
EAR1	YMR171C	MET3	P08536	511 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	LAT1	P12695	482 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	FRS1	P15624	595 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	CKA2	P19454	339 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	HCM1	P25364	564 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	PRO3	P32263	286 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	PET127	P32606	800 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	SHM2	P37291	469 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	YBR053C	P38235	358 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	ERG7	P38604	731 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	SPL2	P38839	148 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	LYS9	P38999	446 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	PES4	P39684	611 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	ELO3	P40319	345 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	NOP9	P47077	666 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	AMA1	P50082	593 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	MTL1	P53214	551 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	TOF1	P53840	1238 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	PRP42	Q03776	544 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	ECM38	Q05902	660 aa	Predicted RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	VPS36	Q06696	566 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	YPR078C	Q06813	372 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	YOL075C	Q08234	1294 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	RIO1	Q12196	484 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	ZRT2	Q12436	422 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	ATG11	Q12527	1178 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	ECM3	Q99252	613 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	RPB2	P08518	1224 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	CAF20	P12962	161 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	GFA1	P14742	717 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	IME1	P21190	360 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	LCB1	P25045	558 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	KRE2	P27809	442 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	EFT1	P32324	842 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	FRD1	P32614	470 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	XRS2	P33301	854 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	NIP100	P33420	868 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	JNM1	P36224	373 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	GET2	P40056	285 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	EMP65	P40085	556 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	PEA2	P40091	420 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	HOS4	P40480	1083 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	BAP3	P41815	604 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	RPC17	P47076	161 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	ASE1	P50275	885 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	CTK1	Q03957	528 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	YLH47	Q06493	454 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	STP4	Q07351	490 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	TSR1	Q07381	788 aa	Known RBP	4.83	□□□□□ -1.64
EAR1	YMR171C	PEX15	Q08215	383 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	DSE3	Q08729	430 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	YPL216W	Q08964	1102 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	NTO1	Q12311	748 aa		4.83	□□□□□ -1.64
EAR1	YMR171C	GSC2	P40989	1895 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	SNF3	P10870	884 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	CDC60	P26637	1090 aa	Known RBP	4.82	□□□□□ -1.64
EAR1	YMR171C	YPT7	P32939	208 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	LAS1	P36146	502 aa	Predicted RBP	4.82	□□□□□ -1.64
EAR1	YMR171C	YSW1	P38280	609 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	DUN1	P39009	513 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	NPR2	P39923	615 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	TOS3	P43637	560 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	BTN2	P53286	410 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	CBK1	P53894	756 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	MDM1	Q01846	1127 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	URH1	Q04179	340 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	ESC8	Q08119	714 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	SMC6	Q12749	1114 aa		4.82	□□□□□ -1.64
EAR1	YMR171C	TUS1	Q06412	1307 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms