RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W MSS4P38994 779 aa3.32□□□□□ -1.88
USE1YGL098W MTW1P39731 289 aa3.32□□□□□ -1.88
USE1YGL098W QDR2P40474 542 aa3.32□□□□□ -1.88
USE1YGL098W XKS1P42826 600 aa3.32□□□□□ -1.88
USE1YGL098W ELP2P42935 788 aa3.32□□□□□ -1.88
USE1YGL098W YFL034WP43564 1073 aa3.32□□□□□ -1.88
USE1YGL098W IRC6P43615 237 aa3.32□□□□□ -1.88
USE1YGL098W LSM1P47017 172 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W BNA3P47039 444 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W YJL049WP47048 450 aa3.32□□□□□ -1.88
USE1YGL098W MDE1P47095 244 aa3.32□□□□□ -1.88
USE1YGL098W ROM1P53046 1155 aa3.32□□□□□ -1.88
USE1YGL098W MET13P53128 600 aa3.32□□□□□ -1.88
USE1YGL098W NMA2P53204 395 aa3.32□□□□□ -1.88
USE1YGL098W PEF1P53238 335 aa3.32□□□□□ -1.88
USE1YGL098W UTP8P53276 713 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W VAC7P53950 1165 aa3.32□□□□□ -1.88
USE1YGL098W ORC4P54791 529 aa3.32□□□□□ -1.88
USE1YGL098W DID2P69771 204 aa3.32□□□□□ -1.88
USE1YGL098W OSH6Q02201 448 aa3.32□□□□□ -1.88
USE1YGL098W YDR476CQ03362 224 aa3.32□□□□□ -1.88
USE1YGL098W FMN1Q03778 218 aa3.32□□□□□ -1.88
USE1YGL098W SMP3Q04174 516 aa3.32□□□□□ -1.88
USE1YGL098W PEX10Q05568 337 aa3.32□□□□□ -1.88
USE1YGL098W VTA1Q06263 330 aa3.32□□□□□ -1.88
USE1YGL098W EAF1Q06337 982 aa3.32□□□□□ -1.88
USE1YGL098W YDR306CQ06640 478 aa3.32□□□□□ -1.88
USE1YGL098W YPR078CQ06813 372 aa3.32□□□□□ -1.88
USE1YGL098W SPO75Q07798 868 aa3.32□□□□□ -1.88
USE1YGL098W PSR2Q07949 397 aa3.32□□□□□ -1.88
USE1YGL098W YAP7Q08182 245 aa3.32□□□□□ -1.88
USE1YGL098W RAX1Q08760 435 aa3.32□□□□□ -1.88
USE1YGL098W FEX1Q08913 375 aa3.32□□□□□ -1.88
USE1YGL098W TRE1Q08919 783 aa3.32□□□□□ -1.88
USE1YGL098W CWC2Q12046 339 aaPredicted RBP3.32□□□□□ -1.88
USE1YGL098W SPE3Q12074 293 aaKnown RBP3.32□□□□□ -1.88
USE1YGL098W NTO1Q12311 748 aa3.32□□□□□ -1.88
USE1YGL098W RRI2Q12348 645 aa3.32□□□□□ -1.88
USE1YGL098W ATG31Q12421 196 aa3.32□□□□□ -1.88
USE1YGL098W HIS4P00815 799 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W ILV2P07342 687 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W MRP2P10663 115 aaPredicted RBP3.31□□□□□ -1.88
USE1YGL098W HSF1P10961 833 aa3.31□□□□□ -1.88
USE1YGL098W GAL2P13181 574 aa3.31□□□□□ -1.88
USE1YGL098W OM45P16547 393 aa3.31□□□□□ -1.88
USE1YGL098W PMA2P19657 947 aa3.31□□□□□ -1.88
USE1YGL098W ISY1P21374 235 aaPredicted RBP3.31□□□□□ -1.88
USE1YGL098W CMK2P22517 447 aa3.31□□□□□ -1.88
USE1YGL098W APN1P22936 367 aa3.31□□□□□ -1.88
USE1YGL098W RVS161P25343 265 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W PEX3P28795 441 aa3.31□□□□□ -1.88
USE1YGL098W ACH1P32316 526 aa3.31□□□□□ -1.88
USE1YGL098W DGR2P32330 852 aa3.31□□□□□ -1.88
USE1YGL098W PPH3P32345 308 aa3.31□□□□□ -1.88
USE1YGL098W TFC1P32367 649 aa3.31□□□□□ -1.88
USE1YGL098W CYM1P32898 989 aa3.31□□□□□ -1.88
USE1YGL098W TRM2P33753 639 aa3.31□□□□□ -1.88
USE1YGL098W PXA2P34230 853 aa3.31□□□□□ -1.88
USE1YGL098W CLG1P35190 452 aa3.31□□□□□ -1.88
USE1YGL098W ATG19P35193 415 aa3.31□□□□□ -1.88
USE1YGL098W MCD4P36051 919 aa3.31□□□□□ -1.88
USE1YGL098W STB6P36085 766 aa3.31□□□□□ -1.88
USE1YGL098W UTP30P36144 274 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W YPK3P38070 525 aa3.31□□□□□ -1.88
USE1YGL098W ARA1P38115 344 aa3.31□□□□□ -1.88
USE1YGL098W KTR4P38131 464 aa3.31□□□□□ -1.88
USE1YGL098W YHI9P38765 294 aa3.31□□□□□ -1.88
USE1YGL098W STN1P38960 494 aa3.31□□□□□ -1.88
USE1YGL098W STL1P39932 569 aa3.31□□□□□ -1.88
USE1YGL098W EMP65P40085 556 aa3.31□□□□□ -1.88
USE1YGL098W PFK26P40433 827 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W UBP7P40453 1071 aa3.31□□□□□ -1.88
USE1YGL098W MAM33P40513 266 aa3.31□□□□□ -1.88
USE1YGL098W FAF1P40546 346 aaPredicted RBP3.31□□□□□ -1.88
USE1YGL098W INP51P40559 946 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W MSS2P40990 351 aa3.31□□□□□ -1.88
USE1YGL098W LSM8P47093 109 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W MSE1P48525 536 aa3.31□□□□□ -1.88
USE1YGL098W ASE1P50275 885 aa3.31□□□□□ -1.88
USE1YGL098W MNP1P53163 194 aaPredicted RBP3.31□□□□□ -1.88
USE1YGL098W YGR021WP53212 290 aa3.31□□□□□ -1.88
USE1YGL098W SNF12P53628 566 aa3.31□□□□□ -1.88
USE1YGL098W DAK1P54838 584 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W SED5Q01590 340 aa3.31□□□□□ -1.88
USE1YGL098W RSC4Q02206 625 aa3.31□□□□□ -1.88
USE1YGL098W MUK1Q02866 612 aa3.31□□□□□ -1.88
USE1YGL098W GCN5Q03330 439 aa3.31□□□□□ -1.88
USE1YGL098W CWC21Q03375 135 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W EST2Q06163 884 aa3.31□□□□□ -1.88
USE1YGL098W CDA1Q06702 301 aa3.31□□□□□ -1.88
USE1YGL098W BRE4Q07660 1125 aa3.31□□□□□ -1.88
USE1YGL098W SGT1Q08446 395 aa3.31□□□□□ -1.88
USE1YGL098W HRK1Q08732 759 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W SNX3Q08826 162 aaKnown RBP3.31□□□□□ -1.88
USE1YGL098W RCN2Q12044 265 aa3.31□□□□□ -1.88
USE1YGL098W ATG34Q12292 412 aa3.31□□□□□ -1.88
USE1YGL098W YDR061WQ12298 539 aa3.31□□□□□ -1.88
USE1YGL098W RRP36Q12481 300 aaPredicted RBP3.31□□□□□ -1.88
USE1YGL098W AVL9Q12500 764 aa3.31□□□□□ -1.88
USE1YGL098W URB1P34241 1764 aaKnown RBP3.3□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms