RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W COG6P53959 839 aa6.2□□□□□ -1.42
RPN11YFR004W UBX4P54730 416 aa6.2□□□□□ -1.42
RPN11YFR004W HER2Q03557 464 aa6.2□□□□□ -1.42
RPN11YFR004W DAL4Q04895 635 aa6.2□□□□□ -1.42
RPN11YFR004W CDD1Q06549 142 aa6.2□□□□□ -1.42
RPN11YFR004W CMS1Q07897 291 aaKnown RBP6.2□□□□□ -1.42
RPN11YFR004W FLC1Q08967 793 aa6.2□□□□□ -1.42
RPN11YFR004W HRT3Q12347 344 aa6.2□□□□□ -1.42
RPN11YFR004W BI3Q9ZZW7 517 aa6.2□□□□□ -1.42
RPN11YFR004W ASP3-2P0CX77 362 aa6.19□□□□□ -1.42
RPN11YFR004W ASP3-3P0CX78 362 aa6.19□□□□□ -1.42
RPN11YFR004W ASP3-4P0CX79 362 aa6.19□□□□□ -1.42
RPN11YFR004W ASP3-1P0CZ17 362 aa6.19□□□□□ -1.42
RPN11YFR004W COX11P19516 300 aaKnown RBP6.19□□□□□ -1.42
RPN11YFR004W SFL1P20134 766 aa6.19□□□□□ -1.42
RPN11YFR004W ABD1P32783 436 aaPredicted RBP6.19□□□□□ -1.42
RPN11YFR004W MRT4P33201 236 aaKnown RBP6.19□□□□□ -1.42
RPN11YFR004W YKR051WP36142 418 aa6.19□□□□□ -1.42
RPN11YFR004W PCA1P38360 1216 aa6.19□□□□□ -1.42
RPN11YFR004W PMC1P38929 1173 aaPredicted RBP6.19□□□□□ -1.42
RPN11YFR004W RAD55P38953 406 aa6.19□□□□□ -1.42
RPN11YFR004W MRPS18P42847 217 aa6.19□□□□□ -1.42
RPN11YFR004W ALY2P47029 1046 aa6.19□□□□□ -1.42
RPN11YFR004W SUB1P54000 292 aaKnown RBP6.19□□□□□ -1.42
RPN11YFR004W YMR027WQ04371 470 aa6.19□□□□□ -1.42
RPN11YFR004W DFG5Q05031 458 aa6.19□□□□□ -1.42
RPN11YFR004W YLR177WQ06251 628 aa6.19□□□□□ -1.42
RPN11YFR004W OPI10Q08202 246 aa6.19□□□□□ -1.42
RPN11YFR004W SGT2Q12118 346 aaKnown RBP6.19□□□□□ -1.42
RPN11YFR004W MCD1Q12158 566 aa6.19□□□□□ -1.42
RPN11YFR004W FLP1P03870 423 aa6.18□□□□□ -1.42
RPN11YFR004W ADE3P07245 946 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W TUB3P09734 445 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W YER152CP10356 443 aa6.18□□□□□ -1.42
RPN11YFR004W NAT1P12945 854 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W MSN1P22148 382 aa6.18□□□□□ -1.42
RPN11YFR004W MRPL25P23369 157 aa6.18□□□□□ -1.42
RPN11YFR004W TSA1P34760 196 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W SWH1P35845 1188 aa6.18□□□□□ -1.42
RPN11YFR004W YHL008CP38750 627 aa6.18□□□□□ -1.42
RPN11YFR004W QNS1P38795 714 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W YPT35P38815 214 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W MNN1P39106 762 aa6.18□□□□□ -1.42
RPN11YFR004W SAW1P39735 261 aa6.18□□□□□ -1.42
RPN11YFR004W DOT6P40059 670 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W RMD8P43620 662 aa6.18□□□□□ -1.42
RPN11YFR004W SUM1P46676 1062 aa6.18□□□□□ -1.42
RPN11YFR004W YJR142WP47173 342 aa6.18□□□□□ -1.42
RPN11YFR004W YNL165WP53891 406 aa6.18□□□□□ -1.42
RPN11YFR004W GPD1Q00055 391 aaKnown RBP6.18□□□□□ -1.42
RPN11YFR004W GTR1Q00582 310 aa6.18□□□□□ -1.42
RPN11YFR004W SHE9Q04172 456 aa6.18□□□□□ -1.42
RPN11YFR004W YCS4Q06156 1176 aa6.18□□□□□ -1.42
RPN11YFR004W YDR018CQ12185 396 aa6.18□□□□□ -1.42
RPN11YFR004W GIS3Q12418 502 aa6.18□□□□□ -1.42
RPN11YFR004W CDC24P11433 854 aaPredicted RBP6.17□□□□□ -1.42
RPN11YFR004W RNA1P11745 407 aaKnown RBP6.17□□□□□ -1.42
RPN11YFR004W KAR4P25583 335 aa6.17□□□□□ -1.42
RPN11YFR004W EFB1P32471 206 aaKnown RBP6.17□□□□□ -1.42
RPN11YFR004W YKL069WP36088 180 aa6.17□□□□□ -1.42
RPN11YFR004W YBR032WP38223 100 aa6.17□□□□□ -1.42
RPN11YFR004W YHR020WP38708 688 aaKnown RBP6.17□□□□□ -1.42
RPN11YFR004W PIC2P40035 300 aa6.17□□□□□ -1.42
RPN11YFR004W YNL040WP53960 456 aaPredicted RBP6.17□□□□□ -1.42
RPN11YFR004W KTR5P53966 522 aaPredicted RBP6.17□□□□□ -1.42
RPN11YFR004W NAN1Q02931 896 aaKnown RBP6.17□□□□□ -1.42
RPN11YFR004W YML119WQ03208 357 aa6.17□□□□□ -1.42
RPN11YFR004W ERV41Q04651 352 aa6.17□□□□□ -1.42
RPN11YFR004W PRM6Q04705 352 aa6.17□□□□□ -1.42
RPN11YFR004W VHS3Q08438 674 aa6.17□□□□□ -1.42
RPN11YFR004W FAP7Q12055 197 aaPredicted RBP6.17□□□□□ -1.42
RPN11YFR004W GAL10P04397 699 aa6.16□□□□□ -1.42
RPN11YFR004W ARD1P07347 238 aaPredicted RBP6.16□□□□□ -1.42
RPN11YFR004W PRI2P20457 528 aa6.16□□□□□ -1.42
RPN11YFR004W TRX1P22217 103 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W MCM5P29496 775 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W MVD1P32377 396 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W NIP1P32497 812 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W TKL2P33315 681 aa6.16□□□□□ -1.42
RPN11YFR004W KDX1P36005 433 aa6.16□□□□□ -1.42
RPN11YFR004W IRS4P36115 615 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W YBR056WP38081 501 aa6.16□□□□□ -1.42
RPN11YFR004W SHE3P38272 425 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W SMF2P38778 549 aa6.16□□□□□ -1.42
RPN11YFR004W GGA2P38817 585 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W SPC97P38863 823 aa6.16□□□□□ -1.42
RPN11YFR004W PCF11P39081 626 aaPredicted RBP6.16□□□□□ -1.42
RPN11YFR004W FLC2P39719 783 aa6.16□□□□□ -1.42
RPN11YFR004W OAF1P39720 1047 aaPredicted RBP6.16□□□□□ -1.42
RPN11YFR004W SAH1P39954 449 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W RPT2P40327 437 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W ASG7P46993 209 aa6.16□□□□□ -1.42
RPN11YFR004W PUS2P53167 370 aa6.16□□□□□ -1.42
RPN11YFR004W YGL036WP53185 909 aaPredicted RBP6.16□□□□□ -1.42
RPN11YFR004W NMA2P53204 395 aa6.16□□□□□ -1.42
RPN11YFR004W TFB2Q02939 513 aa6.16□□□□□ -1.42
RPN11YFR004W SPC24Q04477 213 aa6.16□□□□□ -1.42
RPN11YFR004W TDA5Q06417 326 aaKnown RBP6.16□□□□□ -1.42
RPN11YFR004W OSW1Q08692 278 aa6.16□□□□□ -1.42
RPN11YFR004W GPM2Q12008 311 aa6.16□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 17 ms