RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	GCN4	P03069	281 aa		5.19	□□□□□ -1.58
DEG1	YFL001W	SEC53	P07283	254 aa	Known RBP	5.19	□□□□□ -1.58
DEG1	YFL001W	SUI3	P09064	285 aa	Known RBP	5.19	□□□□□ -1.58
DEG1	YFL001W	BLI1	P35727	113 aa		5.19	□□□□□ -1.58
DEG1	YFL001W	YHR097C	P38809	366 aa	Known RBP	5.19	□□□□□ -1.58
DEG1	YFL001W	YIL161W	P40449	235 aa	Known RBP	5.19	□□□□□ -1.58
DEG1	YFL001W	AAD10	P47182	288 aa		5.19	□□□□□ -1.58
DEG1	YFL001W	SNF12	P53628	566 aa		5.19	□□□□□ -1.58
DEG1	YFL001W	SYF1	Q04048	859 aa	Predicted RBP	5.19	□□□□□ -1.58
DEG1	YFL001W	UTP21	Q06078	939 aa	Predicted RBP	5.19	□□□□□ -1.58
DEG1	YFL001W	PSK2	Q08217	1101 aa		5.19	□□□□□ -1.58
DEG1	YFL001W	NMD4	Q12129	218 aa		5.19	□□□□□ -1.58
DEG1	YFL001W	ATG2	P53855	1592 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	CKA1	P15790	372 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	PRE8	P23639	250 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	UTP9	P38882	575 aa	Known RBP	5.18	□□□□□ -1.58
DEG1	YFL001W	FLC2	P39719	783 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	UBP7	P40453	1071 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	ARF3	P40994	183 aa	RIP-Chip data	5.18	□□□□□ -1.58	not detected
DEG1	YFL001W	YGR151C	P53287	111 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	VPS75	P53853	264 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	RPS15	Q01855	142 aa	Known RBP	5.18	□□□□□ -1.58
DEG1	YFL001W	RAD30	Q04049	632 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	GTB1	Q04924	702 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	STP3	Q05937	343 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	ATG23	Q06671	453 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	SWT1	Q12104	458 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	USV1	Q12132	391 aa		5.18	□□□□□ -1.58
DEG1	YFL001W	RRG1	Q12167	365 aa	Predicted RBP	5.18	□□□□□ -1.58
DEG1	YFL001W	NOP58	Q12499	511 aa	Known RBP	5.18	□□□□□ -1.58
DEG1	YFL001W	PEP1	P32319	1579 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	SSK2	P53599	1579 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	ALG7	P07286	448 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	PDE1	P22434	369 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	CDC5	P32562	705 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	TFC3	P34111	1160 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	YKL050C	P35736	922 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	ALY1	P36117	915 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	CCL1	P37366	393 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	CIR1	P42940	261 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	PIL1	P53252	339 aa	Known RBP	5.17	□□□□□ -1.58
DEG1	YFL001W	YNR061C	P53747	219 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	DAK1	P54838	584 aa	Known RBP	5.17	□□□□□ -1.58
DEG1	YFL001W	RNT1	Q02555	471 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	MFM1	Q02783	413 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	YPL071C	Q02864	156 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	UFO1	Q04511	668 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	CIR2	Q08822	631 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	RKI1	Q12189	258 aa		5.17	□□□□□ -1.58
DEG1	YFL001W	PGA3	Q12746	312 aa	Known RBP	5.17	□□□□□ -1.58
DEG1	YFL001W	ARG3	P05150	338 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	YML003W	P0CF16	290 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	HOM3	P10869	527 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	RED1	P14291	827 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	YCK1	P23291	538 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	LRE1	P25579	583 aa	Known RBP	5.16	□□□□□ -1.58
DEG1	YFL001W	APL3	P38065	1025 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	YBL029W	P38201	376 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	ARO9	P38840	513 aa	Predicted RBP	5.16	□□□□□ -1.58
DEG1	YFL001W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected
DEG1	YFL001W	SLZ1	P40167	298 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	PFK26	P40433	827 aa	Known RBP	5.16	□□□□□ -1.58
DEG1	YFL001W	MRX6	P48564	524 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	IMO32	P53219	342 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	RSC1	P53236	928 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	DIP5	P53388	608 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	SPC98	P53540	846 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	INN1	P53901	409 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	MUB1	Q03162	620 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	NGL2	Q03264	515 aa	Known RBP	5.16	□□□□□ -1.58
DEG1	YFL001W	CTI6	Q08923	506 aa		5.16	□□□□□ -1.58
DEG1	YFL001W	PRS5	Q12265	496 aa	Known RBP	5.16	□□□□□ -1.58
DEG1	YFL001W	PPR1	P07272	904 aa	Predicted RBP	5.15	□□□□□ -1.59
DEG1	YFL001W	CNE1	P27825	502 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	HRR25	P29295	494 aa	Known RBP	5.15	□□□□□ -1.59
DEG1	YFL001W	VMA8	P32610	256 aa	Known RBP	5.15	□□□□□ -1.59
DEG1	YFL001W	THI6	P41835	540 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	GPD2	P41911	440 aa	Known RBP	5.15	□□□□□ -1.59
DEG1	YFL001W	YIP4	P53093	235 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	DSD1	P53095	428 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	BUD17	P53727	317 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	ATG4	P53867	494 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	RIA1	P53893	1110 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	NGL3	Q03210	505 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	RIX7	Q07844	837 aa	Known RBP	5.15	□□□□□ -1.59
DEG1	YFL001W	GRC3	Q07845	632 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	YLR040C	Q07988	224 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	AIM39	Q08223	395 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	YPL216W	Q08964	1102 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	BMS1	Q08965	1183 aa	Known RBP	5.15	□□□□□ -1.59
DEG1	YFL001W	RCN2	Q12044	265 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	SFI1	Q12369	946 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	YER175W-A	Q8TGU4	54 aa		5.15	□□□□□ -1.59
DEG1	YFL001W	CET1	O13297	549 aa	Predicted RBP	5.14	□□□□□ -1.59
DEG1	YFL001W	KAR3	P17119	729 aa		5.14	□□□□□ -1.59
DEG1	YFL001W	KGD2	P19262	463 aa	Predicted RBP	5.14	□□□□□ -1.59
DEG1	YFL001W	ROX1	P25042	368 aa		5.14	□□□□□ -1.59
DEG1	YFL001W	ERG3	P32353	365 aa		5.14	□□□□□ -1.59
DEG1	YFL001W	SRB5	P32585	307 aa		5.14	□□□□□ -1.59
DEG1	YFL001W	KSP1	P38691	1029 aa	Known RBP	5.14	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms