RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C HRT3Q12347 344 aa5.04□□□□□ -1.6
NUP116YMR047C YOL098CQ12496 1037 aa5.04□□□□□ -1.6
NUP116YMR047C CCH1P50077 2039 aa5.04□□□□□ -1.6
NUP116YMR047C GPA1P08539 472 aa5.04□□□□□ -1.6
NUP116YMR047C YPK1P12688 680 aaKnown RBP5.04□□□□□ -1.6
NUP116YMR047C RPC19P28000 142 aaKnown RBP5.04□□□□□ -1.6
NUP116YMR047C DYS1P38791 387 aa5.04□□□□□ -1.6
NUP116YMR047C HEM14P40012 539 aa5.04□□□□□ -1.6
NUP116YMR047C DOT6P40059 670 aaKnown RBP5.04□□□□□ -1.6
NUP116YMR047C TMA108P40462 946 aa5.04□□□□□ -1.6
NUP116YMR047C SNZ3P43545 298 aa5.04□□□□□ -1.6
NUP116YMR047C CNN1P43618 361 aa5.04□□□□□ -1.6
NUP116YMR047C SNX4P47057 423 aa5.04□□□□□ -1.6
NUP116YMR047C YGR237CP50089 785 aa5.04□□□□□ -1.6
NUP116YMR047C SNZ2P53824 298 aa5.04□□□□□ -1.6
NUP116YMR047C GFD1Q04839 188 aaKnown RBP5.04□□□□□ -1.6
NUP116YMR047C ECM38Q05902 660 aaPredicted RBP5.04□□□□□ -1.6
NUP116YMR047C TSR1Q07381 788 aaKnown RBP5.04□□□□□ -1.6
NUP116YMR047C YPQ1Q12010 308 aa5.04□□□□□ -1.6
NUP116YMR047C ARG81P05085 880 aa5.03□□□□□ -1.6
NUP116YMR047C CYC8P14922 966 aa5.03□□□□□ -1.6
NUP116YMR047C PUT4P15380 627 aa5.03□□□□□ -1.6
NUP116YMR047C GSY2P27472 705 aa5.03□□□□□ -1.6
NUP116YMR047C CSG2P35206 410 aa5.03□□□□□ -1.6
NUP116YMR047C YBL036CP38197 257 aa5.03□□□□□ -1.6
NUP116YMR047C EDC3P39998 551 aaKnown RBP5.03□□□□□ -1.6
NUP116YMR047C TFG2P41896 400 aaPredicted RBP5.03□□□□□ -1.6
NUP116YMR047C YGL036WP53185 909 aaPredicted RBP5.03□□□□□ -1.6
NUP116YMR047C IMP4P53941 290 aaKnown RBP5.03□□□□□ -1.6
NUP116YMR047C UBP2Q01476 1272 aa5.03□□□□□ -1.6
NUP116YMR047C HER2Q03557 464 aa5.03□□□□□ -1.6
NUP116YMR047C MFB1Q04922 465 aa5.03□□□□□ -1.6
NUP116YMR047C EAF1Q06337 982 aa5.03□□□□□ -1.6
NUP116YMR047C NBP2Q12163 236 aa5.03□□□□□ -1.6
NUP116YMR047C NDJ1Q12366 352 aa5.03□□□□□ -1.6
NUP116YMR047C VBA3P25594 458 aa5.03□□□□□ -1.6
NUP116YMR047C YKL097CP34245 136 aa5.03□□□□□ -1.6
NUP116YMR047C VBA5P36172 582 aa5.03□□□□□ -1.6
NUP116YMR047C MAK5P38112 773 aaPredicted RBP5.03□□□□□ -1.6
NUP116YMR047C CRP1P38845 465 aaKnown RBP5.03□□□□□ -1.6
NUP116YMR047C HFM1P51979 1187 aa5.03□□□□□ -1.6
NUP116YMR047C TDA7P53882 636 aaPredicted RBP5.03□□□□□ -1.6
NUP116YMR047C INP2Q03824 705 aa5.03□□□□□ -1.6
NUP116YMR047C ABP140Q08641 628 aaKnown RBP5.03□□□□□ -1.6
NUP116YMR047C TAF3Q12297 353 aa5.03□□□□□ -1.6
NUP116YMR047C ADE3P07245 946 aaKnown RBP5.03□□□□□ -1.6
NUP116YMR047C SPT23P35210 1082 aa5.03□□□□□ -1.6
NUP116YMR047C YER130CP39959 443 aa5.03□□□□□ -1.6
NUP116YMR047C ZAP1P47043 880 aa5.03□□□□□ -1.6
NUP116YMR047C HAM1P47119 197 aaKnown RBP5.03□□□□□ -1.6
NUP116YMR047C SSL2Q00578 843 aa5.03□□□□□ -1.6
NUP116YMR047C UBP3Q01477 912 aaKnown RBP RIP-Chip data5.03□□□□□ -1.6not detected
NUP116YMR047C WAR1Q03631 944 aa5.03□□□□□ -1.6
NUP116YMR047C DCS1Q06151 350 aa5.03□□□□□ -1.6
NUP116YMR047C GIC2Q06648 383 aa5.03□□□□□ -1.6
NUP116YMR047C MSB2P32334 1306 aa5.03□□□□□ -1.6
NUP116YMR047C CET1O13297 549 aaPredicted RBP5.02□□□□□ -1.61
NUP116YMR047C CCP1P00431 361 aa5.02□□□□□ -1.61
NUP116YMR047C PYC1P11154 1178 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C ABD1P32783 436 aaPredicted RBP5.02□□□□□ -1.61
NUP116YMR047C NPL6P32832 435 aa5.02□□□□□ -1.61
NUP116YMR047C PET100P38958 111 aa5.02□□□□□ -1.61
NUP116YMR047C RMD8P43620 662 aa5.02□□□□□ -1.61
NUP116YMR047C GUF1P46943 645 aa5.02□□□□□ -1.61
NUP116YMR047C RTT101P47050 842 aa5.02□□□□□ -1.61
NUP116YMR047C ENT3P47160 408 aa5.02□□□□□ -1.61
NUP116YMR047C MUB1Q03162 620 aa5.02□□□□□ -1.61
NUP116YMR047C MCP2Q06567 569 aa5.02□□□□□ -1.61
NUP116YMR047C PSR2Q07949 397 aa5.02□□□□□ -1.61
NUP116YMR047C NOB1Q08444 459 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C ENO2P00925 437 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C SUI3P09064 285 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C MIS1P09440 975 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C KIN3P22209 435 aa5.02□□□□□ -1.61
NUP116YMR047C ECM32P32644 1121 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C SFA1P32771 386 aa5.02□□□□□ -1.61
NUP116YMR047C OTU2P38747 307 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C SMC2P38989 1170 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C EXO1P39875 702 aa5.02□□□□□ -1.61
NUP116YMR047C YTA12P40341 825 aa5.02□□□□□ -1.61
NUP116YMR047C YIL161WP40449 235 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C CEP3P40969 608 aa5.02□□□□□ -1.61
NUP116YMR047C PEX31P53203 462 aa5.02□□□□□ -1.61
NUP116YMR047C EBS1Q03466 884 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C RTN1Q04947 295 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C DIS3Q08162 1001 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C TRM1P15565 570 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C VAN1P23642 535 aa5.02□□□□□ -1.61
NUP116YMR047C UBC6P33296 250 aaPredicted RBP5.02□□□□□ -1.61
NUP116YMR047C RRM3P38766 723 aa5.02□□□□□ -1.61
NUP116YMR047C PCF11P39081 626 aaPredicted RBP5.02□□□□□ -1.61
NUP116YMR047C YKU80Q04437 629 aa5.02□□□□□ -1.61
NUP116YMR047C PRM6Q04705 352 aa5.02□□□□□ -1.61
NUP116YMR047C NEW1Q08972 1196 aaKnown RBP5.02□□□□□ -1.61
NUP116YMR047C VPS13Q07878 3144 aa5.01□□□□□ -1.61
NUP116YMR047C PRT1P06103 763 aaKnown RBP5.01□□□□□ -1.61
NUP116YMR047C SSC1P0CS90 654 aaKnown RBP5.01□□□□□ -1.61
NUP116YMR047C SFL1P20134 766 aa5.01□□□□□ -1.61
NUP116YMR047C PEX1P24004 1043 aa5.01□□□□□ -1.61
NUP116YMR047C RIB7P33312 244 aa5.01□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms