RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C ARP4P80428 489 aa6.45□□□□□ -1.38
DEF1YKL054C RTN2Q12443 393 aa6.45□□□□□ -1.38
DEF1YKL054C ACO1P19414 778 aaKnown RBP RIP-Chip data6.45□□□□□ -1.38not detected
DEF1YKL054C NAM7P30771 971 aaKnown RBP6.45□□□□□ -1.38
DEF1YKL054C RLP7P40693 322 aaKnown RBP6.45□□□□□ -1.38
DEF1YKL054C NIT3P49954 291 aa6.45□□□□□ -1.38
DEF1YKL054C MTC3P53077 123 aa6.45□□□□□ -1.38
DEF1YKL054C CSR1Q06705 408 aaKnown RBP6.45□□□□□ -1.38
DEF1YKL054C MCH5Q08777 521 aa6.45□□□□□ -1.38
DEF1YKL054C KEL3Q08979 651 aaPredicted RBP6.45□□□□□ -1.38
DEF1YKL054C DIN7Q12086 430 aa6.45□□□□□ -1.38
DEF1YKL054C PSF3Q12146 194 aa6.45□□□□□ -1.38
DEF1YKL054C NOP58Q12499 511 aaKnown RBP6.45□□□□□ -1.38
DEF1YKL054C Q0142Q9ZZW4 58 aa6.45□□□□□ -1.38
DEF1YKL054C RRP7P25368 297 aaPredicted RBP6.44□□□□□ -1.38
DEF1YKL054C KIP1P28742 1111 aa6.44□□□□□ -1.38
DEF1YKL054C TFB1P32776 642 aa6.44□□□□□ -1.38
DEF1YKL054C RPT3P33298 428 aaKnown RBP6.44□□□□□ -1.38
DEF1YKL054C CNS1P33313 385 aa6.44□□□□□ -1.38
DEF1YKL054C SDS22P36047 338 aa6.44□□□□□ -1.38
DEF1YKL054C YKR018CP36114 725 aa6.44□□□□□ -1.38
DEF1YKL054C VID28P40547 921 aa6.44□□□□□ -1.38
DEF1YKL054C YJL181WP46987 611 aa6.44□□□□□ -1.38
DEF1YKL054C ARP9Q05123 467 aa6.44□□□□□ -1.38
DEF1YKL054C RSC2Q06488 889 aa6.44□□□□□ -1.38
DEF1YKL054C MDM38Q08179 573 aa6.44□□□□□ -1.38
DEF1YKL054C YPL260WQ08977 551 aa6.44□□□□□ -1.38
DEF1YKL054C PFK2P16862 959 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
DEF1YKL054C SRO9P25567 434 aaKnown RBP6.44□□□□□ -1.38
DEF1YKL054C POT1P27796 417 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
DEF1YKL054C MDL1P33310 695 aa6.44□□□□□ -1.38
DEF1YKL054C LYS5P50113 272 aa6.44□□□□□ -1.38
DEF1YKL054C LAP3Q01532 483 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
DEF1YKL054C CIR2Q08822 631 aa6.44□□□□□ -1.38
DEF1YKL054C PAR32Q12515 295 aaKnown RBP6.44□□□□□ -1.38
DEF1YKL054C VAS1P07806 1104 aaKnown RBP6.43□□□□□ -1.38
DEF1YKL054C TRX1P22217 103 aaKnown RBP6.43□□□□□ -1.38
DEF1YKL054C MNE1P24720 663 aa6.43□□□□□ -1.38
DEF1YKL054C CLB4P24871 460 aa6.43□□□□□ -1.38
DEF1YKL054C MF(ALPHA)2P32435 120 aa6.43□□□□□ -1.38
DEF1YKL054C CTF13P35203 478 aa6.43□□□□□ -1.38
DEF1YKL054C SSZ1P38788 538 aaKnown RBP6.43□□□□□ -1.38
DEF1YKL054C CEM1P39525 442 aa6.43□□□□□ -1.38
DEF1YKL054C YJL055WP47044 245 aa6.43□□□□□ -1.38
DEF1YKL054C MEC3Q02574 474 aa6.43□□□□□ -1.38
DEF1YKL054C TY1A-DR2Q03964 440 aaKnown RBP6.43□□□□□ -1.38
DEF1YKL054C YLH47Q06493 454 aa6.43□□□□□ -1.38
DEF1YKL054C SGT2Q12118 346 aaKnown RBP6.43□□□□□ -1.38
DEF1YKL054C NFI1Q12216 726 aa6.43□□□□□ -1.38
DEF1YKL054C SFI1Q12369 946 aa6.43□□□□□ -1.38
DEF1YKL054C PHO5P00635 467 aa6.42□□□□□ -1.38
DEF1YKL054C TUF1P02992 437 aaKnown RBP6.42□□□□□ -1.38
DEF1YKL054C FPS1P23900 669 aa6.42□□□□□ -1.38
DEF1YKL054C GBP2P25555 427 aaKnown RBP RIP-Chip data6.42□□□□□ -1.38not detected
DEF1YKL054C PRO1P32264 428 aa6.42□□□□□ -1.38
DEF1YKL054C SAC6P32599 642 aaKnown RBP6.42□□□□□ -1.38
DEF1YKL054C BEM4P39011 633 aa6.42□□□□□ -1.38
DEF1YKL054C PSF2P40359 213 aa6.42□□□□□ -1.38
DEF1YKL054C NAS2P40555 220 aa6.42□□□□□ -1.38
DEF1YKL054C YJR039WP47107 1121 aa6.42□□□□□ -1.38
DEF1YKL054C OCA1P50946 238 aaPredicted RBP6.42□□□□□ -1.38
DEF1YKL054C VPS75P53853 264 aa6.42□□□□□ -1.38
DEF1YKL054C ACM1Q08981 209 aa6.42□□□□□ -1.38
DEF1YKL054C YLR149CQ99296 730 aa6.42□□□□□ -1.38
DEF1YKL054C BET2P20133 325 aa6.42□□□□□ -1.38
DEF1YKL054C ADK2P26364 225 aa6.42□□□□□ -1.38
DEF1YKL054C GPI10P30777 616 aa6.42□□□□□ -1.38
DEF1YKL054C PUP2P32379 260 aa6.42□□□□□ -1.38
DEF1YKL054C SPO22P40511 975 aa6.42□□□□□ -1.38
DEF1YKL054C SKP2P42843 763 aa6.42□□□□□ -1.38
DEF1YKL054C YFL054CP43549 646 aa6.42□□□□□ -1.38
DEF1YKL054C SAP4P53036 818 aa6.42□□□□□ -1.38
DEF1YKL054C NNF2P53253 936 aa6.42□□□□□ -1.38
DEF1YKL054C NOP15P53927 220 aaPredicted RBP6.42□□□□□ -1.38
DEF1YKL054C YPL062WQ02781 134 aa6.42□□□□□ -1.38
DEF1YKL054C YML119WQ03208 357 aa6.42□□□□□ -1.38
DEF1YKL054C RNH1Q04740 348 aa6.42□□□□□ -1.38
DEF1YKL054C YOR059CQ08448 450 aaKnown RBP6.42□□□□□ -1.38
DEF1YKL054C YLL058WQ12198 575 aa6.42□□□□□ -1.38
DEF1YKL054C APE1P14904 514 aa6.41□□□□□ -1.38
DEF1YKL054C THR1P17423 357 aaKnown RBP6.41□□□□□ -1.38
DEF1YKL054C SIR1P21691 654 aa6.41□□□□□ -1.38
DEF1YKL054C STE50P25344 346 aa6.41□□□□□ -1.38
DEF1YKL054C FRD1P32614 470 aaKnown RBP6.41□□□□□ -1.38
DEF1YKL054C FMP10P40098 244 aa6.41□□□□□ -1.38
DEF1YKL054C GCD10P41814 478 aa6.41□□□□□ -1.38
DEF1YKL054C FYV8P46949 817 aaKnown RBP6.41□□□□□ -1.38
DEF1YKL054C PSP1P50896 841 aaKnown RBP6.41□□□□□ -1.38
DEF1YKL054C ALF1P53904 254 aa6.41□□□□□ -1.38
DEF1YKL054C IWR1Q07532 353 aaPredicted RBP6.41□□□□□ -1.38
DEF1YKL054C DEF1P35732 738 aaKnown RBP6.41□□□□□ -1.38
DEF1YKL054C NPR3P38742 1146 aa6.41□□□□□ -1.38
DEF1YKL054C QNS1P38795 714 aaKnown RBP6.41□□□□□ -1.38
DEF1YKL054C PCL7P40186 285 aa6.41□□□□□ -1.38
DEF1YKL054C SEC28P40509 296 aaKnown RBP6.41□□□□□ -1.38
DEF1YKL054C JJJ3P47138 172 aa6.41□□□□□ -1.38
DEF1YKL054C SGF73P53165 657 aa6.41□□□□□ -1.38
DEF1YKL054C ELA1P53861 379 aaPredicted RBP6.41□□□□□ -1.38
DEF1YKL054C PEX25Q02969 394 aa6.41□□□□□ -1.38
DEF1YKL054C RMT2Q03305 412 aa6.41□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 35.8 ms