RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W ECM3Q99252 613 aa11.94□□□□□ -0.5
SIM1YIL123W UBC6P33296 250 aaPredicted RBP11.94□□□□□ -0.5
SIM1YIL123W MMS21P38632 267 aa11.94□□□□□ -0.5
SIM1YIL123W SAK1P38990 1142 aa11.94□□□□□ -0.5
SIM1YIL123W SBE2P42223 864 aaKnown RBP11.94□□□□□ -0.5
SIM1YIL123W CTK3P46963 296 aaPredicted RBP11.94□□□□□ -0.5
SIM1YIL123W RIM8P53179 542 aa11.94□□□□□ -0.5
SIM1YIL123W MTG1Q03151 367 aaPredicted RBP11.94□□□□□ -0.5
SIM1YIL123W UTP13Q05946 817 aaKnown RBP11.94□□□□□ -0.5
SIM1YIL123W ABP140Q08641 628 aaKnown RBP11.94□□□□□ -0.5
SIM1YIL123W MSH1P25846 959 aa11.93□□□□□ -0.5
SIM1YIL123W DBF4P32325 704 aa11.93□□□□□ -0.5
SIM1YIL123W PUS2P53167 370 aa11.93□□□□□ -0.5
SIM1YIL123W MSC2Q03455 724 aa11.93□□□□□ -0.5
SIM1YIL123W GYL1Q04322 720 aa11.93□□□□□ -0.5
SIM1YIL123W TDA9Q04545 1251 aa11.93□□□□□ -0.5
SIM1YIL123W ETP1P38748 585 aaKnown RBP11.92□□□□□ -0.5
SIM1YIL123W KAP123P40069 1113 aaKnown RBP11.92□□□□□ -0.5
SIM1YIL123W ASG1P40467 964 aa11.92□□□□□ -0.5
SIM1YIL123W TPO2P53283 614 aa11.92□□□□□ -0.5
SIM1YIL123W YDR278CQ05612 105 aa11.92□□□□□ -0.5
SIM1YIL123W ZPS1Q12512 249 aa11.92□□□□□ -0.5
SIM1YIL123W ADE3P07245 946 aaKnown RBP11.91□□□□□ -0.5
SIM1YIL123W ASP3-2P0CX77 362 aa11.91□□□□□ -0.5
SIM1YIL123W ASP3-3P0CX78 362 aa11.91□□□□□ -0.5
SIM1YIL123W ASP3-4P0CX79 362 aa11.91□□□□□ -0.5
SIM1YIL123W ASP3-1P0CZ17 362 aa11.91□□□□□ -0.5
SIM1YIL123W WHI2P12611 486 aa11.91□□□□□ -0.5
SIM1YIL123W AFT1P22149 690 aa11.91□□□□□ -0.5
SIM1YIL123W RRT12P25381 491 aa11.91□□□□□ -0.5
SIM1YIL123W ECM32P32644 1121 aaKnown RBP11.91□□□□□ -0.5
SIM1YIL123W YBL055CP34220 418 aaPredicted RBP11.91□□□□□ -0.5
SIM1YIL123W GPT2P36148 743 aa11.91□□□□□ -0.5
SIM1YIL123W SPP381P38282 291 aaPredicted RBP11.91□□□□□ -0.5
SIM1YIL123W PMC1P38929 1173 aaPredicted RBP11.91□□□□□ -0.5
SIM1YIL123W RNT1Q02555 471 aa11.91□□□□□ -0.5
SIM1YIL123W BI2P03873 423 aa11.9□□□□□ -0.5
SIM1YIL123W BI4P03879 638 aa11.9□□□□□ -0.5
SIM1YIL123W YER152CP10356 443 aa11.9□□□□□ -0.5
SIM1YIL123W SNA3P14359 133 aa11.9□□□□□ -0.5
SIM1YIL123W CAP1P28495 268 aaKnown RBP11.9□□□□□ -0.5
SIM1YIL123W END3P39013 349 aa11.9□□□□□ -0.5
SIM1YIL123W SAH1P39954 449 aaKnown RBP11.9□□□□□ -0.5
SIM1YIL123W YNL320WP42840 284 aa11.9□□□□□ -0.5
SIM1YIL123W CUS1Q02554 436 aaPredicted RBP11.9□□□□□ -0.5
SIM1YIL123W STE23Q06010 1027 aa11.9□□□□□ -0.5
SIM1YIL123W RUD3Q12234 484 aaKnown RBP11.9□□□□□ -0.5
SIM1YIL123W TIF6Q12522 245 aaKnown RBP11.9□□□□□ -0.5
SIM1YIL123W ATG11Q12527 1178 aa11.9□□□□□ -0.5
SIM1YIL123W BI3Q9ZZW7 517 aa11.9□□□□□ -0.5
SIM1YIL123W RAD1P06777 1100 aa11.89□□□□□ -0.51
SIM1YIL123W EST1P17214 699 aaPredicted RBP11.89□□□□□ -0.51
SIM1YIL123W PRP9P19736 530 aaKnown RBP11.89□□□□□ -0.51
SIM1YIL123W MSS51P32335 436 aa11.89□□□□□ -0.51
SIM1YIL123W TRM2P33753 639 aa11.89□□□□□ -0.51
SIM1YIL123W AIM21P40563 679 aa11.89□□□□□ -0.51
SIM1YIL123W SAD1P43589 448 aa11.89□□□□□ -0.51
SIM1YIL123W YJR039WP47107 1121 aa11.89□□□□□ -0.51
SIM1YIL123W RPL22BP56628 122 aaKnown RBP11.89□□□□□ -0.51
SIM1YIL123W COX4P04037 155 aa11.88□□□□□ -0.51
SIM1YIL123W RPL4AP10664 362 aaKnown RBP11.88□□□□□ -0.51
SIM1YIL123W SFL1P20134 766 aa11.88□□□□□ -0.51
SIM1YIL123W SAP1P39955 897 aaKnown RBP11.88□□□□□ -0.51
SIM1YIL123W ULI1P43604 169 aa11.88□□□□□ -0.51
SIM1YIL123W RPL4BP49626 362 aaKnown RBP11.88□□□□□ -0.51
SIM1YIL123W SFH1Q06168 426 aa11.88□□□□□ -0.51
SIM1YIL123W OMS1Q06668 471 aa11.88□□□□□ -0.51
SIM1YIL123W ICL2Q12031 575 aa11.88□□□□□ -0.51
SIM1YIL123W PRR1P28708 518 aa11.87□□□□□ -0.51
SIM1YIL123W ABD1P32783 436 aaPredicted RBP11.87□□□□□ -0.51
SIM1YIL123W TIF5P38431 405 aaKnown RBP11.87□□□□□ -0.51
SIM1YIL123W SKP2P42843 763 aa11.87□□□□□ -0.51
SIM1YIL123W NMD5P46970 1048 aa11.87□□□□□ -0.51
SIM1YIL123W ZAP1P47043 880 aa11.87□□□□□ -0.51
SIM1YIL123W UTP6Q02354 440 aaKnown RBP11.87□□□□□ -0.51
SIM1YIL123W GAL10P04397 699 aa11.86□□□□□ -0.51
SIM1YIL123W DBP1P24784 617 aaKnown RBP11.86□□□□□ -0.51
SIM1YIL123W RGD1P38339 666 aa11.86□□□□□ -0.51
SIM1YIL123W ECM29P38737 1868 aa11.86□□□□□ -0.51
SIM1YIL123W VPS41P38959 992 aa11.86□□□□□ -0.51
SIM1YIL123W YJR079WP47126 109 aa11.86□□□□□ -0.51
SIM1YIL123W HOP2P53187 214 aa11.86□□□□□ -0.51
SIM1YIL123W YOR223WQ12015 292 aa11.86□□□□□ -0.51
SIM1YIL123W PMS1P14242 873 aa11.86□□□□□ -0.51
SIM1YIL123W VMA4P22203 233 aaKnown RBP11.86□□□□□ -0.51
SIM1YIL123W SPT5P27692 1063 aaKnown RBP11.86□□□□□ -0.51
SIM1YIL123W GCD6P32501 712 aaKnown RBP11.86□□□□□ -0.51
SIM1YIL123W GYP6P32806 458 aa11.86□□□□□ -0.51
SIM1YIL123W YMC2P38087 329 aa11.86□□□□□ -0.51
SIM1YIL123W ECM2P38241 364 aaKnown RBP11.86□□□□□ -0.51
SIM1YIL123W YHR054CP38780 354 aa11.86□□□□□ -0.51
SIM1YIL123W ISM1P48526 1002 aa11.86□□□□□ -0.51
SIM1YIL123W DAK1P54838 584 aaKnown RBP11.86□□□□□ -0.51
SIM1YIL123W UFO1Q04511 668 aa11.86□□□□□ -0.51
SIM1YIL123W PDR1P12383 1068 aa11.85□□□□□ -0.51
SIM1YIL123W PEP5P12868 1029 aa11.85□□□□□ -0.51
SIM1YIL123W GLN3P18494 730 aa11.85□□□□□ -0.51
SIM1YIL123W BCS1P32839 456 aa11.85□□□□□ -0.51
SIM1YIL123W RPT1P33299 467 aaKnown RBP11.85□□□□□ -0.51
SIM1YIL123W PXA1P41909 870 aa11.85□□□□□ -0.51
Retrieved 100 of 5,963 RNA–protein pairs in 6.9 ms