RNA–Protein interactions for RNA: YFL044C

OTU1, Transcript of Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p, yeast

Gene OTU1, Length 906 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
OTU1	YFL044C	GUD1	Q07729	489 aa		4.41	□□□□□ -1.7
OTU1	YFL044C	RTP1	Q12751	981 aa		4.41	□□□□□ -1.7
OTU1	YFL044C	PDR18	P53756	1333 aa		4.41	□□□□□ -1.7
OTU1	YFL044C	PHO8	P11491	566 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	SNA3	P14359	133 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	COQ1	P18900	473 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	SAM2	P19358	384 aa	Known RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	OPI1	P21957	404 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	TKL1	P23254	680 aa	Known RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	ABD1	P32783	436 aa	Predicted RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	STE5	P32917	917 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	MCR1	P36060	302 aa	Known RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	KTR4	P38131	464 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	YBR184W	P38299	523 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	VPS8	P39702	1274 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	SLN1	P39928	1220 aa	Predicted RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	RSP5	P39940	809 aa	Known RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	JHD1	P40034	492 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	LSB3	P43603	459 aa	Known RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	RSC8	P43609	557 aa	Known RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	YJR142W	P47173	342 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	YGR045C	P53229	120 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	ELA1	P53861	379 aa	Predicted RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	DAK1	P54838	584 aa	Known RBP	4.4	□□□□□ -1.71
OTU1	YFL044C	YMR187C	Q03236	431 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	FLC1	Q08967	793 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	ERP3	Q12403	225 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	TRM11	Q12463	433 aa		4.4	□□□□□ -1.71
OTU1	YFL044C	TY1B-A	O13527	1196 aa	Known RBP	4.39	□□□□□ -1.71
OTU1	YFL044C	AI3	P03877	415 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	ERR1	P0CX10	437 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	ERR2	P0CX11	437 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	SAM1	P10659	382 aa	Known RBP	4.39	□□□□□ -1.71
OTU1	YFL044C	INO1	P11986	533 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.39	□□□□□ -1.71	not detected
OTU1	YFL044C	MCM7	P38132	845 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	CNN1	P43618	361 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	PRY1	P47032	299 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	SCS3	P53012	380 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	MCM6	P53091	1017 aa	Known RBP	4.39	□□□□□ -1.71
OTU1	YFL044C	NCE103	P53615	221 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	SLD5	Q03406	294 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	YMR321C	Q04898	105 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	DUS3	Q06053	668 aa	Known RBP	4.39	□□□□□ -1.71
OTU1	YFL044C	ESC2	Q06340	456 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	CLF1	Q12309	687 aa	Predicted RBP	4.39	□□□□□ -1.71
OTU1	YFL044C	YGR161W-C	Q3E744	92 aa		4.39	□□□□□ -1.71
OTU1	YFL044C	CDC16	P09798	840 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	DBP5	P20449	482 aa	Known RBP	4.38	□□□□□ -1.71
OTU1	YFL044C	AGP1	P25376	633 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	SBA1	P28707	216 aa	Known RBP	4.38	□□□□□ -1.71
OTU1	YFL044C	SHP1	P34223	423 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	NNK1	P36003	928 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	MYO3	P36006	1272 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	TAT1	P38085	619 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	SEA4	P38164	1038 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	ALG3	P38179	458 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	RRP8	P38961	392 aa	Known RBP	4.38	□□□□□ -1.71
OTU1	YFL044C	SNF7	P39929	240 aa	Known RBP	4.38	□□□□□ -1.71
OTU1	YFL044C	YGL039W	P53183	348 aa	Known RBP	4.38	□□□□□ -1.71
OTU1	YFL044C	PIB2	P53191	635 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	MRPS35	P53292	345 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	FOL1	P53848	824 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.38	□□□□□ -1.71	not detected
OTU1	YFL044C	RPS15	Q01855	142 aa	Known RBP	4.38	□□□□□ -1.71
OTU1	YFL044C	TIF35	Q04067	274 aa	Known RBP	4.38	□□□□□ -1.71
OTU1	YFL044C	PTC5	Q12511	572 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	YPR053C	Q6Q5F3	151 aa		4.38	□□□□□ -1.71
OTU1	YFL044C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	not detected
OTU1	YFL044C	CHO2	P05374	869 aa	Known RBP	4.37	□□□□□ -1.71
OTU1	YFL044C	NUC1	P08466	329 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	SSB1	P11484	613 aa	Known RBP	4.37	□□□□□ -1.71
OTU1	YFL044C	POL3	P15436	1097 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	not detected
OTU1	YFL044C	PRO3	P32263	286 aa	Known RBP	4.37	□□□□□ -1.71
OTU1	YFL044C	THI4	P32318	326 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	YKL107W	P34251	309 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	REG2	P38232	338 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	VPS45	P38932	577 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	SSB2	P40150	613 aa	Known RBP	4.37	□□□□□ -1.71
OTU1	YFL044C	ARI1	P53111	347 aa	Known RBP	4.37	□□□□□ -1.71
OTU1	YFL044C	VPS30	Q02948	557 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	BRE1	Q07457	700 aa	Known RBP	4.37	□□□□□ -1.71
OTU1	YFL044C	YLR125W	Q12138	136 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	YDR215C	Q12240	137 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	RKM4	Q12504	494 aa		4.37	□□□□□ -1.71
OTU1	YFL044C	CCH1	P50077	2039 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	NFS1	P25374	497 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	RPL8B	P29453	256 aa	Known RBP	4.36	□□□□□ -1.71
OTU1	YFL044C	SMY2	P32909	740 aa	Known RBP	4.36	□□□□□ -1.71
OTU1	YFL044C	MRP8	P35719	219 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	VBA5	P36172	582 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	FLR1	P38124	548 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	ALD5	P40047	520 aa	Known RBP	4.36	□□□□□ -1.71
OTU1	YFL044C	HNT2	P49775	206 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	AZR1	P50080	613 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	LIF1	P53150	421 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	LSB1	P53281	241 aa		4.36	□□□□□ -1.71
OTU1	YFL044C	PTA1	Q01329	785 aa	Predicted RBP	4.36	□□□□□ -1.71
OTU1	YFL044C	RPT6	Q01939	405 aa	Known RBP	4.36	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 78.4 ms