RNA–Protein interactions for RNA: YLR438C-A

LSM3, Transcript of Lsm (Like Sm) protein, yeast

Gene LSM3, Length 270 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LSM3	YLR438C-A	HMI1	Q12039	706 aa		13.7	□□□□□ -0.22
LSM3	YLR438C-A	PXL1	P36166	706 aa		13.69	□□□□□ -0.22
LSM3	YLR438C-A	GRS1	P38088	690 aa	Known RBP	13.69	□□□□□ -0.22
LSM3	YLR438C-A	ALG11	P53954	548 aa	Known RBP	13.69	□□□□□ -0.22
LSM3	YLR438C-A	ASP3-2	P0CX77	362 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	ASP3-3	P0CX78	362 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	ASP3-4	P0CX79	362 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	ASP3-1	P0CZ17	362 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	RPL4A	P10664	362 aa	Known RBP	13.68	□□□□□ -0.22
LSM3	YLR438C-A	UBX7	P38349	436 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	BRL1	P38770	471 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	SDS3	P40505	327 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	DAS1	P47005	663 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	RPL4B	P49626	362 aa	Known RBP	13.68	□□□□□ -0.22
LSM3	YLR438C-A	STE20	Q03497	939 aa	Known RBP	13.68	□□□□□ -0.22
LSM3	YLR438C-A	APL4	Q12028	832 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	YDL206W	Q12424	762 aa		13.68	□□□□□ -0.22
LSM3	YLR438C-A	COX4	P04037	155 aa		13.67	□□□□□ -0.22
LSM3	YLR438C-A	IME1	P21190	360 aa		13.67	□□□□□ -0.22
LSM3	YLR438C-A	RRP43	P25359	394 aa	Predicted RBP	13.67	□□□□□ -0.22
LSM3	YLR438C-A	PDC6	P26263	563 aa	Known RBP	13.67	□□□□□ -0.22
LSM3	YLR438C-A	KIP1	P28742	1111 aa		13.67	□□□□□ -0.22
LSM3	YLR438C-A	YHL026C	P38740	315 aa		13.67	□□□□□ -0.22
LSM3	YLR438C-A	OSW7	P43611	510 aa		13.67	□□□□□ -0.22
LSM3	YLR438C-A	UTP5	Q04177	643 aa	Known RBP	13.67	□□□□□ -0.22
LSM3	YLR438C-A	VPS38	Q05919	439 aa		13.67	□□□□□ -0.22
LSM3	YLR438C-A	MAG2	Q06436	670 aa	Known RBP	13.67	□□□□□ -0.22
LSM3	YLR438C-A	OSH2	Q12451	1283 aa		13.67	□□□□□ -0.22
LSM3	YLR438C-A	SPO12	P17123	173 aa		13.66	□□□□□ -0.22
LSM3	YLR438C-A	RPT1	P33299	467 aa	Known RBP	13.66	□□□□□ -0.22
LSM3	YLR438C-A	JNM1	P36224	373 aa		13.66	□□□□□ -0.22
LSM3	YLR438C-A	YML082W	Q04533	649 aa	Known RBP	13.66	□□□□□ -0.22
LSM3	YLR438C-A	TSR1	Q07381	788 aa	Known RBP	13.66	□□□□□ -0.22
LSM3	YLR438C-A	PPR1	P07272	904 aa	Predicted RBP	13.65	□□□□□ -0.22
LSM3	YLR438C-A	MNR2	P35724	969 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	YER186C	P40101	306 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	ESL1	P40456	1118 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	IES1	P43579	692 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	ULI1	P43604	169 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	CPR7	P47103	393 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	FOL2	P51601	243 aa	Known RBP	13.65	□□□□□ -0.22
LSM3	YLR438C-A	YGR035C	P53222	116 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	ESBP6	P53918	673 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	ABP140	Q08641	628 aa	Known RBP	13.65	□□□□□ -0.22
LSM3	YLR438C-A	NEW1	Q08972	1196 aa	Known RBP	13.65	□□□□□ -0.22
LSM3	YLR438C-A	PUS1	Q12211	544 aa	Known RBP	13.65	□□□□□ -0.22
LSM3	YLR438C-A	GIS3	Q12418	502 aa		13.65	□□□□□ -0.22
LSM3	YLR438C-A	TIF1	P10081	395 aa	Known RBP	13.64	□□□□□ -0.23
LSM3	YLR438C-A	RAD54	P32863	898 aa		13.64	□□□□□ -0.23
LSM3	YLR438C-A	CSE2	P33308	149 aa		13.64	□□□□□ -0.23
LSM3	YLR438C-A	MAC1	P35192	417 aa		13.64	□□□□□ -0.23
LSM3	YLR438C-A	POA1	P38218	177 aa		13.64	□□□□□ -0.23
LSM3	YLR438C-A	KAP123	P40069	1113 aa	Known RBP	13.64	□□□□□ -0.23
LSM3	YLR438C-A	ATG3	P40344	310 aa		13.64	□□□□□ -0.23
LSM3	YLR438C-A	SBE2	P42223	864 aa	Known RBP	13.64	□□□□□ -0.23
LSM3	YLR438C-A	MTF2	P10849	440 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	RSA4	P25382	515 aa	Known RBP	13.63	□□□□□ -0.23
LSM3	YLR438C-A	YHR054C	P38780	354 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	SHQ1	P40486	507 aa	Predicted RBP	13.63	□□□□□ -0.23
LSM3	YLR438C-A	HXT8	P40886	569 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	CLA4	P48562	842 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	DRN1	P53255	507 aa	Known RBP	13.63	□□□□□ -0.23
LSM3	YLR438C-A	YGR130C	P53278	816 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	ERG5	P54781	538 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	CTR9	P89105	1077 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	SKY1	Q03656	742 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	DNL4	Q08387	944 aa	Predicted RBP	13.63	□□□□□ -0.23
LSM3	YLR438C-A	YOR022C	Q12204	715 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	YOL098C	Q12496	1037 aa		13.63	□□□□□ -0.23
LSM3	YLR438C-A	CDC33	P07260	213 aa	Known RBP	13.62	□□□□□ -0.23
LSM3	YLR438C-A	TUP1	P16649	713 aa		13.62	□□□□□ -0.23
LSM3	YLR438C-A	COX11	P19516	300 aa	Known RBP	13.62	□□□□□ -0.23
LSM3	YLR438C-A	RRT12	P25381	491 aa		13.62	□□□□□ -0.23
LSM3	YLR438C-A	MMM1	P41800	426 aa		13.62	□□□□□ -0.23
LSM3	YLR438C-A	ESC2	Q06340	456 aa		13.62	□□□□□ -0.23
LSM3	YLR438C-A	MOT1	P32333	1867 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	SNF1	P06782	633 aa	Known RBP	13.61	□□□□□ -0.23
LSM3	YLR438C-A	CDC42	P19073	191 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	DAL2	P25335	343 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	CSG2	P35206	410 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	PCH2	P38126	564 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	ALT1	P52893	592 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	ALF1	P53904	254 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	YLR455W	Q06188	304 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	ESC8	Q08119	714 aa		13.61	□□□□□ -0.23
LSM3	YLR438C-A	GAL10	P04397	699 aa		13.6	□□□□□ -0.23
LSM3	YLR438C-A	EFB1	P32471	206 aa	Known RBP	13.6	□□□□□ -0.23
LSM3	YLR438C-A	TAD1	P53065	400 aa		13.6	□□□□□ -0.23
LSM3	YLR438C-A	SDH5	Q08230	162 aa		13.6	□□□□□ -0.23
LSM3	YLR438C-A	SPT2	P06843	333 aa	Predicted RBP	13.59	□□□□□ -0.23
LSM3	YLR438C-A	SPT5	P27692	1063 aa	Known RBP	13.59	□□□□□ -0.23
LSM3	YLR438C-A	HEL1	P36113	551 aa		13.59	□□□□□ -0.23
LSM3	YLR438C-A	PTC4	P38089	393 aa		13.59	□□□□□ -0.23
LSM3	YLR438C-A	TBS1	P38114	1094 aa		13.59	□□□□□ -0.23
LSM3	YLR438C-A	CAJ1	P39101	391 aa		13.59	□□□□□ -0.23
LSM3	YLR438C-A	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	13.59	□□□□□ -0.23	not detected
LSM3	YLR438C-A	PPM1	Q04081	328 aa		13.59	□□□□□ -0.23
LSM3	YLR438C-A	CTF3	Q12748	733 aa		13.59	□□□□□ -0.23
LSM3	YLR438C-A	VPS3	P23643	1011 aa		13.58	□□□□□ -0.24
LSM3	YLR438C-A	CAD1	P24813	409 aa	Known RBP	13.58	□□□□□ -0.24

Retrieved 100 of 5,963 RNA–protein pairs in 59.9 ms