RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	ERG3	P32353	365 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	DID4	P36108	232 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	IFA38	P38286	347 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	NPR2	P39923	615 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	YEL068C	P39977	110 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	SLD3	P53135	668 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	BTN2	P53286	410 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	YNR065C	P53751	1116 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	TIM11	P81449	96 aa	Predicted RBP	4.84	□□□□□ -1.64
CDC9	YDL164C	LCD1	Q04377	747 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	YLR287C	Q05881	355 aa		4.84	□□□□□ -1.64
CDC9	YDL164C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.64	not detected
CDC9	YDL164C	MRP10	O75012	95 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	HTS1	P07263	546 aa	Known RBP	4.83	□□□□□ -1.64
CDC9	YDL164C	MTH1	P35198	433 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	ALG3	P38179	458 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	PUG1	P40100	303 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	AXL1	P40851	1208 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	YML6	P51998	286 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	PRP43	P53131	767 aa	Known RBP	4.83	□□□□□ -1.64
CDC9	YDL164C	MRPL19	P53875	158 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	MET7	Q08645	548 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	HAL9	Q12180	1030 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	MTF2	P10849	440 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	MRP7	P12687	371 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	RET1	P22276	1149 aa	Known RBP	4.83	□□□□□ -1.64
CDC9	YDL164C	AAR2	P32357	355 aa	Predicted RBP	4.83	□□□□□ -1.64
CDC9	YDL164C	CDC12	P32468	407 aa	Known RBP	4.83	□□□□□ -1.64
CDC9	YDL164C	NPL6	P32832	435 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	ADD66	P36040	267 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	YJL055W	P47044	245 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	BLS1	Q06071	122 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	YPR027C	Q12079	277 aa		4.83	□□□□□ -1.64
CDC9	YDL164C	CMK1	P27466	446 aa	Known RBP	4.82	□□□□□ -1.64
CDC9	YDL164C	ECM2	P38241	364 aa	Known RBP	4.82	□□□□□ -1.64
CDC9	YDL164C	YHR202W	P38887	602 aa		4.82	□□□□□ -1.64
CDC9	YDL164C	YHR218W	P38899	603 aa		4.82	□□□□□ -1.64
CDC9	YDL164C	MAD3	P47074	515 aa		4.82	□□□□□ -1.64
CDC9	YDL164C	YNR063W	P53749	607 aa		4.82	□□□□□ -1.64
CDC9	YDL164C	SPC19	Q03954	165 aa		4.82	□□□□□ -1.64
CDC9	YDL164C	VID22	Q05934	901 aa		4.82	□□□□□ -1.64
CDC9	YDL164C	DUS3	Q06053	668 aa	Known RBP	4.82	□□□□□ -1.64
CDC9	YDL164C	DCS2	Q12123	353 aa		4.82	□□□□□ -1.64
CDC9	YDL164C	CPA2	P03965	1118 aa	Known RBP	4.81	□□□□□ -1.64
CDC9	YDL164C	RPL11A	P0C0W9	174 aa	Known RBP	4.81	□□□□□ -1.64
CDC9	YDL164C	FUS1	P11710	512 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	ORC2	P32833	620 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	SET3	P36124	751 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	ESL2	P36168	1195 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	NCL1	P38205	684 aa	Known RBP	4.81	□□□□□ -1.64
CDC9	YDL164C	YBR225W	P38321	900 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	YFL054C	P43549	646 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	SAE2	P46946	345 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	CCT8	P47079	568 aa	Known RBP	4.81	□□□□□ -1.64
CDC9	YDL164C	YJR124C	P47159	448 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	MSN5	P52918	1224 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	NCE103	P53615	221 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	ARP7	Q12406	477 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	RRP36	Q12481	300 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC9	YDL164C	RPL11B	Q3E757	174 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC9	YDL164C	SSM4	P40318	1319 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	ADH4	P10127	382 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	RED1	P14291	827 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	CCZ1	P38273	704 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	MXR1	P40029	184 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	YPL071C	Q02864	156 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	HOS3	Q02959	697 aa	Known RBP	4.81	□□□□□ -1.64
CDC9	YDL164C	SRC1	Q03707	834 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	HRQ1	Q05549	1077 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	ENT1	Q12518	454 aa		4.81	□□□□□ -1.64
CDC9	YDL164C	CDC16	P09798	840 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	SWI6	P09959	803 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	PHO81	P17442	1178 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	YCL002C	P25565	263 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	KNS1	P32350	737 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	PEX5	P35056	612 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	EMC3	P36039	253 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	RGA1	P39083	1007 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	YER010C	P40011	234 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	CIT3	P43635	486 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	SET2	P46995	733 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	PTK2	P47116	818 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	ASK10	P48361	1146 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	ATP22	P50273	684 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	UTP22	P53254	1237 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	BIO5	P53744	561 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	ARP4	P80428	489 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	SYF1	Q04048	859 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	GNT1	Q12096	491 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	OLE1	P21147	510 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	YCL049C	P25577	312 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	SAS3	P34218	831 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	TSL1	P38427	1098 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	INP51	P40559	946 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	PPT1	P53043	513 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	NHX1	Q04121	633 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	COG8	Q04632	607 aa		4.8	□□□□□ -1.64
CDC9	YDL164C	GSF2	Q04697	403 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	CUE5	Q08412	411 aa	Known RBP	4.8	□□□□□ -1.64
CDC9	YDL164C	VHS3	Q08438	674 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 28.6 ms