RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C ERG4P25340 473 aa3.19□□□□□ -1.9
PCF11YDR228C GRX1P25373 110 aaKnown RBP3.19□□□□□ -1.9
PCF11YDR228C SEC21P32074 935 aaKnown RBP3.19□□□□□ -1.9
PCF11YDR228C REC104P33323 182 aa3.18□□□□□ -1.9
PCF11YDR228C YKR011CQ02209 353 aa3.18□□□□□ -1.9
PCF11YDR228C RPL8BP29453 256 aaKnown RBP3.18□□□□□ -1.9
PCF11YDR228C RPD3P32561 433 aa3.18□□□□□ -1.9
PCF11YDR228C SCT1P32784 759 aa3.18□□□□□ -1.9
PCF11YDR228C CTF13P35203 478 aa3.18□□□□□ -1.9
PCF11YDR228C PET10P36139 283 aa3.18□□□□□ -1.9
PCF11YDR228C TRM13Q12383 476 aa3.18□□□□□ -1.9
PCF11YDR228C HBN1Q96VH4 193 aa3.18□□□□□ -1.9
PCF11YDR228C CAD1P24813 409 aaKnown RBP3.17□□□□□ -1.9
PCF11YDR228C URA1P28272 314 aaPredicted RBP3.17□□□□□ -1.9
PCF11YDR228C CDC11P32458 415 aa3.17□□□□□ -1.9
PCF11YDR228C TYE7P33122 291 aaPredicted RBP3.17□□□□□ -1.9
PCF11YDR228C YIL108WP40483 696 aaKnown RBP3.17□□□□□ -1.9
PCF11YDR228C ALR2P43553 858 aa3.17□□□□□ -1.9
PCF11YDR228C VPS30Q02948 557 aa3.17□□□□□ -1.9
PCF11YDR228C PEX19Q07418 342 aa3.17□□□□□ -1.9
PCF11YDR228C YPR071WQ12346 211 aa3.17□□□□□ -1.9
PCF11YDR228C YPT53P36019 220 aa3.16□□□□□ -1.9
PCF11YDR228C SUL1P38359 859 aa3.16□□□□□ -1.9
PCF11YDR228C NPL3Q01560 414 aaKnown RBP RIP-Chip data3.16□□□□□ -1.9not detected
PCF11YDR228C RNT1Q02555 471 aa3.16□□□□□ -1.9
PCF11YDR228C NAN1Q02931 896 aaKnown RBP3.16□□□□□ -1.9
PCF11YDR228C OMS1Q06668 471 aa3.16□□□□□ -1.9
PCF11YDR228C ENV7Q12003 364 aa3.16□□□□□ -1.9
PCF11YDR228C TRM11Q12463 433 aa3.16□□□□□ -1.9
PCF11YDR228C MSD1P15179 658 aaKnown RBP3.16□□□□□ -1.9
PCF11YDR228C PRP4P20053 465 aaKnown RBP3.16□□□□□ -1.9
PCF11YDR228C RFA1P22336 621 aaKnown RBP3.16□□□□□ -1.9
PCF11YDR228C ERP6P53198 216 aa3.16□□□□□ -1.9
PCF11YDR228C SPO75Q07798 868 aa3.16□□□□□ -1.9
PCF11YDR228C WRS1Q12109 432 aaKnown RBP3.16□□□□□ -1.9
PCF11YDR228C PPR1P07272 904 aaPredicted RBP3.15□□□□□ -1.91
PCF11YDR228C ALG7P07286 448 aa3.15□□□□□ -1.91
PCF11YDR228C YBR284WP38150 797 aa3.15□□□□□ -1.91
PCF11YDR228C CEP3P40969 608 aa3.15□□□□□ -1.91
PCF11YDR228C TMN2Q04562 672 aa3.15□□□□□ -1.91
PCF11YDR228C EAF1Q06337 982 aa3.15□□□□□ -1.91
PCF11YDR228C UBX5Q06682 500 aa3.15□□□□□ -1.91
PCF11YDR228C MPH2P0CD99 609 aa3.14□□□□□ -1.91
PCF11YDR228C YHR020WP38708 688 aaKnown RBP3.14□□□□□ -1.91
PCF11YDR228C YHR078WP38799 552 aa3.14□□□□□ -1.91
PCF11YDR228C STB4P50104 949 aa3.14□□□□□ -1.91
PCF11YDR228C TOP3P13099 656 aa3.13□□□□□ -1.91
PCF11YDR228C QRI1P43123 477 aaKnown RBP3.13□□□□□ -1.91
PCF11YDR228C MRPS35P53292 345 aa3.13□□□□□ -1.91
PCF11YDR228C MCH5Q08777 521 aa3.13□□□□□ -1.91
PCF11YDR228C ACF2Q12168 779 aa3.13□□□□□ -1.91
PCF11YDR228C SWM1Q12379 170 aa3.13□□□□□ -1.91
PCF11YDR228C UBP6P43593 499 aaKnown RBP3.13□□□□□ -1.91
PCF11YDR228C JSN1P47135 1091 aaKnown RBP RIP-Chip data3.13□□□□□ -1.91not detected
PCF11YDR228C ASI2P53895 289 aa3.13□□□□□ -1.91
PCF11YDR228C TAF8Q03750 510 aa3.13□□□□□ -1.91
PCF11YDR228C HAL9Q12180 1030 aa3.13□□□□□ -1.91
PCF11YDR228C RAD4P14736 754 aa3.12□□□□□ -1.91
PCF11YDR228C EMC3P36039 253 aa3.12□□□□□ -1.91
PCF11YDR228C RPP1P38786 293 aa3.12□□□□□ -1.91
PCF11YDR228C UBA2P52488 636 aa3.12□□□□□ -1.91
PCF11YDR228C YGR283CP53336 341 aaPredicted RBP3.12□□□□□ -1.91
PCF11YDR228C NOG2P53742 486 aaKnown RBP3.12□□□□□ -1.91
PCF11YDR228C DUS1P53759 423 aaKnown RBP3.12□□□□□ -1.91
PCF11YDR228C FRE5Q08908 694 aa3.12□□□□□ -1.91
PCF11YDR228C CIT1P00890 479 aa3.11□□□□□ -1.91
PCF11YDR228C HSP60P19882 572 aaKnown RBP3.11□□□□□ -1.91
PCF11YDR228C ARE1P25628 610 aa3.11□□□□□ -1.91
PCF11YDR228C CYS3P31373 394 aaKnown RBP3.11□□□□□ -1.91
PCF11YDR228C GYP8P43570 497 aa3.11□□□□□ -1.91
PCF11YDR228C YJL049WP47048 450 aa3.11□□□□□ -1.91
PCF11YDR228C MUK1Q02866 612 aa3.11□□□□□ -1.91
PCF11YDR228C DLT1Q04216 342 aa3.11□□□□□ -1.91
PCF11YDR228C ADY4Q05955 493 aa3.11□□□□□ -1.91
PCF11YDR228C GPR1Q12361 961 aa3.11□□□□□ -1.91
PCF11YDR228C OSH2Q12451 1283 aa3.11□□□□□ -1.91
PCF11YDR228C YBR053CP38235 358 aa3.11□□□□□ -1.91
PCF11YDR228C ELO3P40319 345 aa3.11□□□□□ -1.91
PCF11YDR228C VHR1P40522 640 aa3.11□□□□□ -1.91
PCF11YDR228C MUS81Q04149 632 aaPredicted RBP3.11□□□□□ -1.91
PCF11YDR228C IRC10Q08118 586 aa3.11□□□□□ -1.91
PCF11YDR228C THI21Q08975 551 aa3.11□□□□□ -1.91
PCF11YDR228C RPS9AO13516 197 aaKnown RBP3.1□□□□□ -1.91
PCF11YDR228C MET3P08536 511 aa3.1□□□□□ -1.91
PCF11YDR228C BET3P36149 193 aa3.1□□□□□ -1.91
PCF11YDR228C DAL7P21826 554 aa3.09□□□□□ -1.91
PCF11YDR228C YCL002CP25565 263 aa3.09□□□□□ -1.91
PCF11YDR228C MTH1P35198 433 aa3.09□□□□□ -1.91
PCF11YDR228C PPS1P38148 807 aa3.09□□□□□ -1.91
PCF11YDR228C FKH2P41813 862 aa3.09□□□□□ -1.91
PCF11YDR228C NIT3P49954 291 aa3.09□□□□□ -1.91
PCF11YDR228C MUP1P50276 574 aa3.09□□□□□ -1.91
PCF11YDR228C TIM44Q01852 431 aa3.09□□□□□ -1.91
PCF11YDR228C YMR206WQ03695 313 aa3.09□□□□□ -1.91
PCF11YDR228C LRS4Q04087 347 aaKnown RBP3.09□□□□□ -1.91
PCF11YDR228C FLC1Q08967 793 aa3.09□□□□□ -1.91
PCF11YDR228C CAF20P12962 161 aaKnown RBP3.09□□□□□ -1.92
PCF11YDR228C TY4A-JP47023 414 aa3.09□□□□□ -1.92
PCF11YDR228C TAD1P53065 400 aa3.09□□□□□ -1.92
PCF11YDR228C PUS2P53167 370 aa3.09□□□□□ -1.92
Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms