RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W MET4P32389 672 aa2.42□□□□□ -2.02
SIR4YDR227W YKL050CP35736 922 aa2.42□□□□□ -2.02
SIR4YDR227W AIM9P40053 627 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W PTK2P47116 818 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W PSP2P50109 593 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W SYF1Q04048 859 aaPredicted RBP2.42□□□□□ -2.02
SIR4YDR227W DPL1Q05567 589 aa2.42□□□□□ -2.02
SIR4YDR227W MDM36Q06820 579 aa2.42□□□□□ -2.02
SIR4YDR227W CBC2Q08920 208 aaKnown RBP RIP-Chip data2.42□□□□□ -2.02not detected
SIR4YDR227W YPR071WQ12346 211 aa2.42□□□□□ -2.02
SIR4YDR227W LYP1P32487 611 aa2.42□□□□□ -2.02
SIR4YDR227W ASH1P34233 588 aa2.42□□□□□ -2.02
SIR4YDR227W MTH1P35198 433 aa2.42□□□□□ -2.02
SIR4YDR227W VPS8P39702 1274 aa2.42□□□□□ -2.02
SIR4YDR227W YEL023CP39992 682 aa2.42□□□□□ -2.02
SIR4YDR227W RIM21P48565 533 aa2.42□□□□□ -2.02
SIR4YDR227W MRPL19P53875 158 aa2.42□□□□□ -2.02
SIR4YDR227W RMT2Q03305 412 aa2.42□□□□□ -2.02
SIR4YDR227W UTP14Q04500 899 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W AOS1Q06624 347 aa2.42□□□□□ -2.02
SIR4YDR227W VIP1Q06685 1146 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W NEW1Q08972 1196 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W PFK27Q12471 397 aaPredicted RBP2.42□□□□□ -2.02
SIR4YDR227W SUP45P12385 437 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W TRK1P12685 1235 aa2.42□□□□□ -2.02
SIR4YDR227W SRV2P17555 526 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W RAD16P31244 790 aa2.42□□□□□ -2.02
SIR4YDR227W GGA2P38817 585 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W ERR3P42222 437 aa2.42□□□□□ -2.02
SIR4YDR227W GTR1Q00582 310 aa2.42□□□□□ -2.02
SIR4YDR227W PUF6Q04373 656 aaKnown RBP2.42□□□□□ -2.02
SIR4YDR227W YDR306CQ06640 478 aa2.42□□□□□ -2.02
SIR4YDR227W YOR097CQ12274 175 aaPredicted RBP2.42□□□□□ -2.02
SIR4YDR227W GPR1Q12361 961 aa2.42□□□□□ -2.02
SIR4YDR227W STE6P12866 1290 aa2.41□□□□□ -2.02
SIR4YDR227W MLS1P30952 554 aa2.41□□□□□ -2.02
SIR4YDR227W KTR3P38130 404 aaPredicted RBP2.41□□□□□ -2.02
SIR4YDR227W TOM71P38825 639 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W IRR1P40541 1150 aa2.41□□□□□ -2.02
SIR4YDR227W SET2P46995 733 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W CCT8P47079 568 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W YGR021WP53212 290 aa2.41□□□□□ -2.02
SIR4YDR227W MET14Q02196 202 aa2.41□□□□□ -2.02
SIR4YDR227W HAP5Q02516 242 aa2.41□□□□□ -2.02
SIR4YDR227W NFI1Q12216 726 aa2.41□□□□□ -2.02
SIR4YDR227W CLF1Q12309 687 aaPredicted RBP2.41□□□□□ -2.02
SIR4YDR227W FKS3Q04952 1785 aa2.41□□□□□ -2.02
SIR4YDR227W FUB1P25659 250 aa2.41□□□□□ -2.02
SIR4YDR227W GCD6P32501 712 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W UME6P39001 836 aa2.41□□□□□ -2.02
SIR4YDR227W NUP84P52891 726 aa2.41□□□□□ -2.02
SIR4YDR227W YBP2P53169 641 aa2.41□□□□□ -2.02
SIR4YDR227W ISR1Q06098 443 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W YCG1Q06680 1035 aa2.41□□□□□ -2.02
SIR4YDR227W PET111P08468 800 aa2.41□□□□□ -2.02
SIR4YDR227W AAR2P32357 355 aaPredicted RBP2.41□□□□□ -2.02
SIR4YDR227W NIC96P34077 839 aa2.41□□□□□ -2.02
SIR4YDR227W UIP5P36137 443 aa2.41□□□□□ -2.02
SIR4YDR227W BUD16P39988 312 aa2.41□□□□□ -2.02
SIR4YDR227W MAM1P40065 302 aa2.41□□□□□ -2.02
SIR4YDR227W ALA1P40825 983 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W MNP1P53163 194 aaPredicted RBP2.41□□□□□ -2.02
SIR4YDR227W RBG2P53295 368 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W SFB2P53953 876 aa2.41□□□□□ -2.02
SIR4YDR227W PRP3Q03338 469 aaPredicted RBP2.41□□□□□ -2.02
SIR4YDR227W STE20Q03497 939 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W YHM2Q04013 314 aa2.41□□□□□ -2.02
SIR4YDR227W ERF2Q06551 359 aa2.41□□□□□ -2.02
SIR4YDR227W LYS21Q12122 440 aaKnown RBP2.41□□□□□ -2.02
SIR4YDR227W YLR358CO13565 187 aa2.4□□□□□ -2.02
SIR4YDR227W CDC31P06704 161 aaKnown RBP2.4□□□□□ -2.02
SIR4YDR227W RPL8AP17076 256 aaKnown RBP2.4□□□□□ -2.02
SIR4YDR227W DBF20P32328 564 aa2.4□□□□□ -2.02
SIR4YDR227W ECM32P32644 1121 aaKnown RBP2.4□□□□□ -2.02
SIR4YDR227W EPL1P43572 832 aa2.4□□□□□ -2.02
SIR4YDR227W PCL10P53124 433 aa2.4□□□□□ -2.02
SIR4YDR227W NAB6Q03735 1134 aaKnown RBP RIP-Chip data2.4□□□□□ -2.02not detected
SIR4YDR227W VID22Q05934 901 aa2.4□□□□□ -2.02
SIR4YDR227W YDL073WQ07454 984 aa2.4□□□□□ -2.02
SIR4YDR227W PSR1Q07800 427 aa2.4□□□□□ -2.02
SIR4YDR227W TAH18Q12181 623 aa2.4□□□□□ -2.02
SIR4YDR227W GAL7P08431 366 aa2.4□□□□□ -2.03
SIR4YDR227W RPB4P20433 221 aaPredicted RBP2.4□□□□□ -2.03
SIR4YDR227W SAN1P22470 610 aa2.4□□□□□ -2.03
SIR4YDR227W GBP2P25555 427 aaKnown RBP RIP-Chip data2.4□□□□□ -2.03not detected
SIR4YDR227W MCM10P32354 571 aa2.4□□□□□ -2.03
SIR4YDR227W NAB2P32505 525 aaKnown RBP RIP-Chip data2.4□□□□□ -2.03not detected
SIR4YDR227W SOL3P38858 249 aa2.4□□□□□ -2.03
SIR4YDR227W YJL045WP47052 634 aa2.4□□□□□ -2.03
SIR4YDR227W MET13P53128 600 aa2.4□□□□□ -2.03
SIR4YDR227W YGR035CP53222 116 aa2.4□□□□□ -2.03
SIR4YDR227W CSL4P53859 292 aaPredicted RBP2.4□□□□□ -2.03
SIR4YDR227W HFD1Q04458 532 aa2.4□□□□□ -2.03
SIR4YDR227W YDR056CQ12025 205 aa2.4□□□□□ -2.03
SIR4YDR227W HMI1Q12039 706 aa2.4□□□□□ -2.03
SIR4YDR227W SCP160P06105 1222 aaKnown RBP RIP-Chip data2.4□□□□□ -2.03not detected
SIR4YDR227W SRS2P12954 1174 aa2.4□□□□□ -2.03
SIR4YDR227W NTH2P35172 780 aa2.4□□□□□ -2.03
SIR4YDR227W GPB2P39717 880 aa2.4□□□□□ -2.03
SIR4YDR227W SAE2P46946 345 aa2.4□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 30.3 ms