RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	VBA5	P36172	582 aa		5.22	□□□□□ -1.57
CUP9	YPL177C	OCA5	P38738	679 aa		5.22	□□□□□ -1.57
CUP9	YPL177C	MBP1	P39678	833 aa		5.22	□□□□□ -1.57
CUP9	YPL177C	IOC3	P43596	787 aa		5.22	□□□□□ -1.57
CUP9	YPL177C	SPP382	Q06411	708 aa	Predicted RBP	5.22	□□□□□ -1.57
CUP9	YPL177C	ENA1	P13587	1091 aa		5.21	□□□□□ -1.58
CUP9	YPL177C	SBA1	P28707	216 aa	Known RBP	5.21	□□□□□ -1.58
CUP9	YPL177C	HRR25	P29295	494 aa	Known RBP	5.21	□□□□□ -1.58
CUP9	YPL177C	STE5	P32917	917 aa		5.21	□□□□□ -1.58
CUP9	YPL177C	YAP1801	P38856	637 aa		5.21	□□□□□ -1.58
CUP9	YPL177C	ENA2	Q01896	1091 aa		5.21	□□□□□ -1.58
CUP9	YPL177C	CDA1	Q06702	301 aa		5.21	□□□□□ -1.58
CUP9	YPL177C	PPM2	Q08282	695 aa		5.21	□□□□□ -1.58
CUP9	YPL177C	ENA5	Q12691	1091 aa		5.21	□□□□□ -1.58
CUP9	YPL177C	LAS17	Q12446	633 aa		5.2	□□□□□ -1.58
CUP9	YPL177C	PFK1	P16861	987 aa	Known RBP	5.19	□□□□□ -1.58
CUP9	YPL177C	OAR1	P35731	278 aa		5.19	□□□□□ -1.58
CUP9	YPL177C	YKL151C	P36059	337 aa		5.19	□□□□□ -1.58
CUP9	YPL177C	MOH1	P38191	138 aa		5.19	□□□□□ -1.58
CUP9	YPL177C	YBR184W	P38299	523 aa		5.19	□□□□□ -1.58
CUP9	YPL177C	RPP2A	P05319	106 aa	Known RBP	5.18	□□□□□ -1.58
CUP9	YPL177C	SPE1	P08432	466 aa		5.18	□□□□□ -1.58
CUP9	YPL177C	RAD4	P14736	754 aa		5.18	□□□□□ -1.58
CUP9	YPL177C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	5.18	□□□□□ -1.58	not detected
CUP9	YPL177C	KRI1	P42846	591 aa	Known RBP	5.18	□□□□□ -1.58
CUP9	YPL177C	YGR012W	P53206	393 aa		5.18	□□□□□ -1.58
CUP9	YPL177C	NAN1	Q02931	896 aa	Known RBP	5.18	□□□□□ -1.58
CUP9	YPL177C	SHE9	Q04172	456 aa		5.18	□□□□□ -1.58
CUP9	YPL177C	OSW2	Q12202	724 aa		5.18	□□□□□ -1.58
CUP9	YPL177C	YOL098C	Q12496	1037 aa		5.18	□□□□□ -1.58
CUP9	YPL177C	MRP8	P35719	219 aa		5.17	□□□□□ -1.58
CUP9	YPL177C	BUL1	P48524	976 aa		5.17	□□□□□ -1.58
CUP9	YPL177C	YML122C	Q03207	126 aa		5.17	□□□□□ -1.58
CUP9	YPL177C	HRQ1	Q05549	1077 aa		5.17	□□□□□ -1.58
CUP9	YPL177C	MDM38	Q08179	573 aa		5.17	□□□□□ -1.58
CUP9	YPL177C	AIM39	Q08223	395 aa		5.17	□□□□□ -1.58
CUP9	YPL177C	YLL058W	Q12198	575 aa		5.17	□□□□□ -1.58
CUP9	YPL177C	SRP101	P32916	621 aa		5.16	□□□□□ -1.58
CUP9	YPL177C	TIM54	P47045	478 aa		5.16	□□□□□ -1.58
CUP9	YPL177C	YJL049W	P47048	450 aa		5.16	□□□□□ -1.58
CUP9	YPL177C	ENB1	Q08299	606 aa		5.16	□□□□□ -1.58
CUP9	YPL177C	NPC2	Q12408	173 aa		5.16	□□□□□ -1.58
CUP9	YPL177C	SRP40	P32583	406 aa	Predicted RBP	5.15	□□□□□ -1.59
CUP9	YPL177C	PBY1	P38254	753 aa		5.15	□□□□□ -1.59
CUP9	YPL177C	GIC1	P38785	314 aa		5.15	□□□□□ -1.59
CUP9	YPL177C	IRR1	P40541	1150 aa		5.15	□□□□□ -1.59
CUP9	YPL177C	NCS6	P53088	359 aa		5.15	□□□□□ -1.59
CUP9	YPL177C	HUL5	P53119	910 aa		5.15	□□□□□ -1.59
CUP9	YPL177C	NSE3	Q05541	303 aa		5.15	□□□□□ -1.59
CUP9	YPL177C	FMP25	Q08023	583 aa		5.15	□□□□□ -1.59
CUP9	YPL177C	CDC53	Q12018	815 aa	Known RBP	5.15	□□□□□ -1.59
CUP9	YPL177C	ECM21	P38167	1117 aa	Known RBP	5.14	□□□□□ -1.59
CUP9	YPL177C	SNF7	P39929	240 aa	Known RBP	5.14	□□□□□ -1.59
CUP9	YPL177C	URM1	P40554	99 aa	Predicted RBP	5.14	□□□□□ -1.59
CUP9	YPL177C	BDF2	Q07442	638 aa		5.14	□□□□□ -1.59
CUP9	YPL177C	RPL8B	P29453	256 aa	Known RBP	5.13	□□□□□ -1.59
CUP9	YPL177C	PFD1	P46988	109 aa		5.13	□□□□□ -1.59
CUP9	YPL177C	ORC1	P54784	914 aa	Predicted RBP	5.13	□□□□□ -1.59
CUP9	YPL177C	SRT1	Q03175	343 aa		5.13	□□□□□ -1.59
CUP9	YPL177C	SPO75	Q07798	868 aa		5.13	□□□□□ -1.59
CUP9	YPL177C	HSF1	P10961	833 aa		5.12	□□□□□ -1.59
CUP9	YPL177C	FUN30	P31380	1131 aa		5.12	□□□□□ -1.59
CUP9	YPL177C	YKL091C	P33324	310 aa	Known RBP	5.12	□□□□□ -1.59
CUP9	YPL177C	CCC2	P38995	1004 aa		5.12	□□□□□ -1.59
CUP9	YPL177C	NPP2	P39997	493 aa		5.12	□□□□□ -1.59
CUP9	YPL177C	UBX5	Q06682	500 aa		5.12	□□□□□ -1.59
CUP9	YPL177C	YLR040C	Q07988	224 aa		5.12	□□□□□ -1.59
CUP9	YPL177C	YTA7	P40340	1379 aa		5.12	□□□□□ -1.59
CUP9	YPL177C	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.11	□□□□□ -1.59	not detected
CUP9	YPL177C	KAR4	P25583	335 aa		5.11	□□□□□ -1.59
CUP9	YPL177C	EFT1	P32324	842 aa	Known RBP	5.11	□□□□□ -1.59
CUP9	YPL177C	YHR020W	P38708	688 aa	Known RBP	5.11	□□□□□ -1.59
CUP9	YPL177C	ALR2	P43553	858 aa		5.11	□□□□□ -1.59
CUP9	YPL177C	YGR125W	P53273	1036 aa		5.11	□□□□□ -1.59
CUP9	YPL177C	DUS3	Q06053	668 aa	Known RBP	5.11	□□□□□ -1.59
CUP9	YPL177C	EAF1	Q06337	982 aa		5.11	□□□□□ -1.59
CUP9	YPL177C	YDR306C	Q06640	478 aa		5.11	□□□□□ -1.59
CUP9	YPL177C	WHI4	Q07655	649 aa	Known RBP	5.11	□□□□□ -1.59
CUP9	YPL177C	FLC1	Q08967	793 aa		5.11	□□□□□ -1.59
CUP9	YPL177C	OSH2	Q12451	1283 aa		5.11	□□□□□ -1.59
CUP9	YPL177C	ARE1	P25628	610 aa		5.1	□□□□□ -1.59
CUP9	YPL177C	PSP2	P50109	593 aa	Known RBP	5.1	□□□□□ -1.59
CUP9	YPL177C	UBA2	P52488	636 aa		5.1	□□□□□ -1.59
CUP9	YPL177C	HSP60	P19882	572 aa	Known RBP	5.09	□□□□□ -1.59
CUP9	YPL177C	RSP5	P39940	809 aa	Known RBP	5.09	□□□□□ -1.59
CUP9	YPL177C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	5.09	□□□□□ -1.59	not detected
CUP9	YPL177C	ERP6	P53198	216 aa		5.09	□□□□□ -1.59
CUP9	YPL177C	UTP8	P53276	713 aa	Known RBP	5.09	□□□□□ -1.59
CUP9	YPL177C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.09	□□□□□ -1.59	not detected
CUP9	YPL177C	YOL073C	Q08232	322 aa		5.09	□□□□□ -1.59
CUP9	YPL177C	CIT1	P00890	479 aa		5.08	□□□□□ -1.6
CUP9	YPL177C	PRP9	P19736	530 aa	Known RBP	5.08	□□□□□ -1.6
CUP9	YPL177C	AAR2	P32357	355 aa	Predicted RBP	5.08	□□□□□ -1.6
CUP9	YPL177C	HBS1	P32769	611 aa	Known RBP	5.08	□□□□□ -1.6
CUP9	YPL177C	ATG19	P35193	415 aa		5.08	□□□□□ -1.6
CUP9	YPL177C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	5.08	□□□□□ -1.6	not detected
CUP9	YPL177C	SAH1	P39954	449 aa	Known RBP	5.08	□□□□□ -1.6
CUP9	YPL177C	GUP2	Q08929	609 aa		5.08	□□□□□ -1.6
CUP9	YPL177C	YOR131C	Q12486	218 aa		5.08	□□□□□ -1.6
CUP9	YPL177C	PPH3	P32345	308 aa		5.07	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms