RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W REG2P38232 338 aa6.5□□□□□ -1.37
ATG4YNL223W EFM2P38347 419 aa6.5□□□□□ -1.37
ATG4YNL223W RPN3P40016 523 aaKnown RBP6.5□□□□□ -1.37
ATG4YNL223W OSW7P43611 510 aa6.5□□□□□ -1.37
ATG4YNL223W JSN1P47135 1091 aaKnown RBP RIP-Chip data6.5□□□□□ -1.37not detected
ATG4YNL223W VID30P53076 958 aa6.5□□□□□ -1.37
ATG4YNL223W ALF1P53904 254 aa6.5□□□□□ -1.37
ATG4YNL223W RBA50Q04418 439 aa6.5□□□□□ -1.37
ATG4YNL223W YLR287CQ05881 355 aa6.5□□□□□ -1.37
ATG4YNL223W SAM3Q08986 587 aa6.5□□□□□ -1.37
ATG4YNL223W MED1Q12321 566 aa6.5□□□□□ -1.37
ATG4YNL223W SSB1P11484 613 aaKnown RBP6.49□□□□□ -1.37
ATG4YNL223W TCP1P12612 559 aaKnown RBP6.49□□□□□ -1.37
ATG4YNL223W RRP43P25359 394 aaPredicted RBP6.49□□□□□ -1.37
ATG4YNL223W CDC60P26637 1090 aaKnown RBP6.49□□□□□ -1.37
ATG4YNL223W APL1P27351 700 aa6.49□□□□□ -1.37
ATG4YNL223W MRF1P30775 413 aaPredicted RBP6.49□□□□□ -1.37
ATG4YNL223W DBP7P36120 742 aaKnown RBP6.49□□□□□ -1.37
ATG4YNL223W BSD2P38356 321 aa6.49□□□□□ -1.37
ATG4YNL223W SSB2P40150 613 aaKnown RBP6.49□□□□□ -1.37
ATG4YNL223W UBP15P50101 1230 aa6.49□□□□□ -1.37
ATG4YNL223W HUL5P53119 910 aa6.49□□□□□ -1.37
ATG4YNL223W NCS2P53923 493 aaPredicted RBP6.49□□□□□ -1.37
ATG4YNL223W ERG5P54781 538 aa6.49□□□□□ -1.37
ATG4YNL223W UME1Q03010 460 aa6.49□□□□□ -1.37
ATG4YNL223W SLD5Q03406 294 aa6.49□□□□□ -1.37
ATG4YNL223W VPS38Q05919 439 aa6.49□□□□□ -1.37
ATG4YNL223W DUS4Q06063 367 aa6.49□□□□□ -1.37
ATG4YNL223W CUR1Q06469 252 aa6.49□□□□□ -1.37
ATG4YNL223W RRP6Q12149 733 aaKnown RBP6.49□□□□□ -1.37
ATG4YNL223W SCP160P06105 1222 aaKnown RBP RIP-Chip data6.48□□□□□ -1.37not detected
ATG4YNL223W SPO12P17123 173 aa6.48□□□□□ -1.37
ATG4YNL223W SEC8P32855 1065 aa6.48□□□□□ -1.37
ATG4YNL223W MNN4P36044 1178 aa6.48□□□□□ -1.37
ATG4YNL223W TVP38P36164 337 aa6.48□□□□□ -1.37
ATG4YNL223W UBP13P38187 747 aa6.48□□□□□ -1.37
ATG4YNL223W CCC2P38995 1004 aa6.48□□□□□ -1.37
ATG4YNL223W HMF1P40037 129 aaKnown RBP6.48□□□□□ -1.37
ATG4YNL223W ATG3P40344 310 aa6.48□□□□□ -1.37
ATG4YNL223W CCM1P48237 864 aaPredicted RBP6.48□□□□□ -1.37
ATG4YNL223W JIP4Q03361 876 aa6.48□□□□□ -1.37
ATG4YNL223W YOL036WQ08206 761 aa6.48□□□□□ -1.37
ATG4YNL223W NEW1Q08972 1196 aaKnown RBP6.48□□□□□ -1.37
ATG4YNL223W PLP2Q12017 286 aa6.48□□□□□ -1.37
ATG4YNL223W FAL1Q12099 399 aaKnown RBP6.48□□□□□ -1.37
ATG4YNL223W NCR1Q12200 1170 aa6.48□□□□□ -1.37
ATG4YNL223W PPR1P07272 904 aaPredicted RBP6.47□□□□□ -1.37
ATG4YNL223W PHO8P11491 566 aa6.47□□□□□ -1.37
ATG4YNL223W DBP5P20449 482 aaKnown RBP6.47□□□□□ -1.37
ATG4YNL223W YSC83P32792 385 aa6.47□□□□□ -1.37
ATG4YNL223W ASH1P34233 588 aa6.47□□□□□ -1.37
ATG4YNL223W SHQ1P40486 507 aaPredicted RBP6.47□□□□□ -1.37
ATG4YNL223W YMR321CQ04898 105 aa6.47□□□□□ -1.37
ATG4YNL223W SVF1Q05515 481 aa6.47□□□□□ -1.37
ATG4YNL223W SEC23P15303 768 aaKnown RBP6.47□□□□□ -1.37
ATG4YNL223W TUP1P16649 713 aa6.47□□□□□ -1.37
ATG4YNL223W CDC48P25694 835 aaKnown RBP6.47□□□□□ -1.37
ATG4YNL223W TFC4P33339 1025 aa6.47□□□□□ -1.37
ATG4YNL223W APE3P37302 537 aaKnown RBP6.47□□□□□ -1.37
ATG4YNL223W ERC1P38767 581 aa6.47□□□□□ -1.37
ATG4YNL223W LCB2P40970 561 aa6.47□□□□□ -1.37
ATG4YNL223W SPR3P41901 512 aa6.47□□□□□ -1.37
ATG4YNL223W IES1P43579 692 aa6.47□□□□□ -1.37
ATG4YNL223W CAF130P53280 1122 aaPredicted RBP6.47□□□□□ -1.37
ATG4YNL223W ROD1Q02805 837 aa6.47□□□□□ -1.37
ATG4YNL223W HOS3Q02959 697 aaKnown RBP6.47□□□□□ -1.37
ATG4YNL223W TY3A-GQ12173 290 aa6.47□□□□□ -1.37
ATG4YNL223W YOL098CQ12496 1037 aa6.47□□□□□ -1.37
ATG4YNL223W TY3A-IQ99219 290 aa6.47□□□□□ -1.37
ATG4YNL223W MTF2P10849 440 aa6.46□□□□□ -1.38
ATG4YNL223W PET123P17558 318 aa6.46□□□□□ -1.38
ATG4YNL223W PDC6P26263 563 aaKnown RBP6.46□□□□□ -1.38
ATG4YNL223W YUR1P26725 428 aa6.46□□□□□ -1.38
ATG4YNL223W NAM7P30771 971 aaKnown RBP6.46□□□□□ -1.38
ATG4YNL223W KTR2P33550 425 aa6.46□□□□□ -1.38
ATG4YNL223W STO1P34160 861 aaKnown RBP6.46□□□□□ -1.38
ATG4YNL223W MOT2P34909 587 aaKnown RBP6.46□□□□□ -1.38
ATG4YNL223W ATG19P35193 415 aa6.46□□□□□ -1.38
ATG4YNL223W YEL025CP39991 1188 aa6.46□□□□□ -1.38
ATG4YNL223W SEC9P40357 651 aa6.46□□□□□ -1.38
ATG4YNL223W FIG4P42837 879 aa6.46□□□□□ -1.38
ATG4YNL223W VPS53P47061 822 aa6.46□□□□□ -1.38
ATG4YNL223W AVT1P47082 602 aa6.46□□□□□ -1.38
ATG4YNL223W APT1P49435 187 aaKnown RBP6.46□□□□□ -1.38
ATG4YNL223W TAD1P53065 400 aa6.46□□□□□ -1.38
ATG4YNL223W TAM41P53230 385 aa6.46□□□□□ -1.38
ATG4YNL223W GIR2Q03768 265 aaPredicted RBP6.46□□□□□ -1.38
ATG4YNL223W UTP5Q04177 643 aaKnown RBP6.46□□□□□ -1.38
ATG4YNL223W DED1P06634 604 aaKnown RBP6.45□□□□□ -1.38
ATG4YNL223W UBC1P21734 215 aaKnown RBP6.45□□□□□ -1.38
ATG4YNL223W COT1P32798 439 aa6.45□□□□□ -1.38
ATG4YNL223W XRS2P33301 854 aa6.45□□□□□ -1.38
ATG4YNL223W CAJ1P39101 391 aa6.45□□□□□ -1.38
ATG4YNL223W EFM4P40516 257 aa6.45□□□□□ -1.38
ATG4YNL223W ULI1P43604 169 aa6.45□□□□□ -1.38
ATG4YNL223W RPS7BP48164 190 aaKnown RBP6.45□□□□□ -1.38
ATG4YNL223W COQ9Q05779 260 aa6.45□□□□□ -1.38
ATG4YNL223W YLR297WQ05899 129 aa6.45□□□□□ -1.38
ATG4YNL223W NOC3Q07896 663 aaPredicted RBP6.45□□□□□ -1.38
ATG4YNL223W RLP24Q07915 199 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 23.1 ms