RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C MNN11P46985 422 aaKnown RBP6.76□□□□□ -1.33
DEF1YKL054C MSM1P22438 575 aa6.76□□□□□ -1.33
DEF1YKL054C BRF1P29056 596 aa6.76□□□□□ -1.33
DEF1YKL054C ALG2P43636 503 aa6.76□□□□□ -1.33
DEF1YKL054C MSN5P52918 1224 aa6.76□□□□□ -1.33
DEF1YKL054C YAP1802P53309 568 aa6.76□□□□□ -1.33
DEF1YKL054C LSC2P53312 427 aa6.76□□□□□ -1.33
DEF1YKL054C CEG1Q01159 459 aaPredicted RBP6.76□□□□□ -1.33
DEF1YKL054C RCF1Q03713 159 aa6.76□□□□□ -1.33
DEF1YKL054C GFA1P14742 717 aaKnown RBP6.75□□□□□ -1.33
DEF1YKL054C SAN1P22470 610 aa6.75□□□□□ -1.33
DEF1YKL054C DAL1P32375 460 aa6.75□□□□□ -1.33
DEF1YKL054C KAP122P32767 1081 aa6.75□□□□□ -1.33
DEF1YKL054C DOM34P33309 386 aa6.75□□□□□ -1.33
DEF1YKL054C YKL107WP34251 309 aa6.75□□□□□ -1.33
DEF1YKL054C DHR2P36009 735 aaPredicted RBP6.75□□□□□ -1.33
DEF1YKL054C SHM1P37292 490 aaPredicted RBP6.75□□□□□ -1.33
DEF1YKL054C CAJ1P39101 391 aa6.75□□□□□ -1.33
DEF1YKL054C SIT1P39980 628 aa6.75□□□□□ -1.33
DEF1YKL054C CAF16P43569 289 aa6.75□□□□□ -1.33
DEF1YKL054C IML2P47031 731 aa6.75□□□□□ -1.33
DEF1YKL054C VTC4P47075 721 aa6.75□□□□□ -1.33
DEF1YKL054C YER152CP10356 443 aa6.74□□□□□ -1.33
DEF1YKL054C IRE1P32361 1115 aa6.74□□□□□ -1.33
DEF1YKL054C PET309P32522 965 aaPredicted RBP6.74□□□□□ -1.33
DEF1YKL054C GUS1P46655 708 aaKnown RBP RIP-Chip data6.74□□□□□ -1.33not detected
DEF1YKL054C ECM9Q02202 377 aa6.74□□□□□ -1.33
DEF1YKL054C SRP1Q02821 542 aaKnown RBP6.74□□□□□ -1.33
DEF1YKL054C TCB1Q12466 1186 aa6.74□□□□□ -1.33
DEF1YKL054C CCT5P40413 562 aaKnown RBP6.74□□□□□ -1.33
DEF1YKL054C YIL165CP40446 119 aa6.74□□□□□ -1.33
DEF1YKL054C MOT3P54785 490 aaKnown RBP6.74□□□□□ -1.33
DEF1YKL054C ARA2Q04212 335 aa6.74□□□□□ -1.33
DEF1YKL054C AOS1Q06624 347 aa6.74□□□□□ -1.33
DEF1YKL054C SCM3Q12334 223 aa6.74□□□□□ -1.33
DEF1YKL054C YPR071WQ12346 211 aa6.74□□□□□ -1.33
DEF1YKL054C RMP1Q12530 201 aa6.74□□□□□ -1.33
DEF1YKL054C PHR1P05066 565 aaKnown RBP RIP-Chip data6.73□□□□□ -1.33not detected
DEF1YKL054C AFR1P33304 620 aa6.73□□□□□ -1.33
DEF1YKL054C PEX5P35056 612 aa6.73□□□□□ -1.33
DEF1YKL054C RXT2P38255 430 aa6.73□□□□□ -1.33
DEF1YKL054C RAT1Q02792 1006 aaKnown RBP6.73□□□□□ -1.33
DEF1YKL054C TAF11Q04226 346 aa6.73□□□□□ -1.33
DEF1YKL054C YDR338CQ05497 695 aa6.73□□□□□ -1.33
DEF1YKL054C RRP9Q06506 573 aaKnown RBP6.73□□□□□ -1.33
DEF1YKL054C PFK1P16861 987 aaKnown RBP6.73□□□□□ -1.33
DEF1YKL054C SYP1P25623 870 aaKnown RBP6.73□□□□□ -1.33
DEF1YKL054C EXO5P38289 585 aa6.73□□□□□ -1.33
DEF1YKL054C MPH1P40562 993 aa6.73□□□□□ -1.33
DEF1YKL054C PRP3Q03338 469 aaPredicted RBP6.73□□□□□ -1.33
DEF1YKL054C YDR286CQ05530 114 aa6.73□□□□□ -1.33
DEF1YKL054C ATG33Q06485 197 aa6.73□□□□□ -1.33
DEF1YKL054C GUD1Q07729 489 aa6.73□□□□□ -1.33
DEF1YKL054C RSC58Q07979 502 aa6.73□□□□□ -1.33
DEF1YKL054C YPL191CQ08930 360 aa6.73□□□□□ -1.33
DEF1YKL054C YOL114CQ12322 202 aa6.73□□□□□ -1.33
DEF1YKL054C SER1P33330 395 aaKnown RBP6.72□□□□□ -1.33
DEF1YKL054C ECM2P38241 364 aaKnown RBP6.72□□□□□ -1.33
DEF1YKL054C GPD2P41911 440 aaKnown RBP6.72□□□□□ -1.33
DEF1YKL054C JJJ2P46997 583 aa6.72□□□□□ -1.33
DEF1YKL054C CNM67P53865 581 aaKnown RBP6.72□□□□□ -1.33
DEF1YKL054C ECM38Q05902 660 aaPredicted RBP6.72□□□□□ -1.33
DEF1YKL054C NBA1Q08229 501 aaKnown RBP6.72□□□□□ -1.33
DEF1YKL054C MET8P15807 274 aa6.72□□□□□ -1.33
DEF1YKL054C DBP5P20449 482 aaKnown RBP6.72□□□□□ -1.33
DEF1YKL054C MUD2P36084 527 aaKnown RBP6.72□□□□□ -1.33
DEF1YKL054C PSY4P38193 441 aa6.72□□□□□ -1.33
DEF1YKL054C YNR063WP53749 607 aa6.72□□□□□ -1.33
DEF1YKL054C NSE5Q03718 556 aa6.72□□□□□ -1.33
DEF1YKL054C IDI1P15496 288 aa6.71□□□□□ -1.34
DEF1YKL054C COX11P19516 300 aaKnown RBP6.71□□□□□ -1.34
DEF1YKL054C RER1P25560 188 aa6.71□□□□□ -1.34
DEF1YKL054C SCT1P32784 759 aa6.71□□□□□ -1.34
DEF1YKL054C MCD4P36051 919 aa6.71□□□□□ -1.34
DEF1YKL054C GYP8P43570 497 aa6.71□□□□□ -1.34
DEF1YKL054C AIM14P53109 570 aa6.71□□□□□ -1.34
DEF1YKL054C ERO1Q03103 563 aa6.71□□□□□ -1.34
DEF1YKL054C TDA9Q04545 1251 aa6.71□□□□□ -1.34
DEF1YKL054C PUS1Q12211 544 aaKnown RBP6.71□□□□□ -1.34
DEF1YKL054C TY1A-BLQ12266 440 aa6.71□□□□□ -1.34
DEF1YKL054C SPO21Q12411 609 aa6.71□□□□□ -1.34
DEF1YKL054C SEC18P18759 758 aaKnown RBP6.7□□□□□ -1.34
DEF1YKL054C AAD3P25612 363 aa6.7□□□□□ -1.34
DEF1YKL054C RAD16P31244 790 aa6.7□□□□□ -1.34
DEF1YKL054C SAS3P34218 831 aa6.7□□□□□ -1.34
DEF1YKL054C LRP1P38801 184 aaKnown RBP6.7□□□□□ -1.34
DEF1YKL054C HXT6P39003 570 aaKnown RBP6.7□□□□□ -1.34
DEF1YKL054C HXT7P39004 570 aa6.7□□□□□ -1.34
DEF1YKL054C NOP16P40007 231 aaKnown RBP6.7□□□□□ -1.34
DEF1YKL054C TPA1P40032 644 aaKnown RBP6.7□□□□□ -1.34
DEF1YKL054C TAN1P53072 289 aaPredicted RBP6.7□□□□□ -1.34
DEF1YKL054C SPO71Q03868 1245 aa6.7□□□□□ -1.34
DEF1YKL054C YDR444WQ04093 687 aa6.7□□□□□ -1.34
DEF1YKL054C COG8Q04632 607 aa6.7□□□□□ -1.34
DEF1YKL054C RGA2Q06407 1009 aa6.7□□□□□ -1.34
DEF1YKL054C BI4P03879 638 aa6.7□□□□□ -1.34
DEF1YKL054C RPS21AP0C0V8 87 aaKnown RBP6.7□□□□□ -1.34
DEF1YKL054C HVG1P0CE11 249 aa6.7□□□□□ -1.34
DEF1YKL054C AAC3P18238 307 aa6.7□□□□□ -1.34
DEF1YKL054C GLY1P37303 387 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 31.7 ms