Protein–RNA interactions for Protein: P43569

CAF16, CCR4-associated factor 16, yeast

Predictions only

Length 289 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	P43569	NSR1	YGR159C	1245 nt		16.43	■□□□□ 0.22
CAF16	P43569	YML009W-B	YML009W-B	477 nt		16.02	■□□□□ 0.16
CAF16	P43569	NOP1	YDL014W	984 nt		15.42	■□□□□ 0.06
CAF16	P43569	MDJ1	YFL016C	1536 nt		15.1	■□□□□ 0.01
CAF16	P43569	SSA3	YBL075C	1950 nt		14.03	□□□□□ -0.16
CAF16	P43569	YKL036C	YKL036C	393 nt		13.99	□□□□□ -0.17
CAF16	P43569	YJL027C	YJL027C	417 nt		13.91	□□□□□ -0.18
CAF16	P43569	Q0182	Q0182	405 nt		13.64	□□□□□ -0.23
CAF16	P43569	SRX1	YKL086W	384 nt		13.48	□□□□□ -0.25
CAF16	P43569	Q0297	Q0297	156 nt		13.45	□□□□□ -0.26
CAF16	P43569	MOT3	YMR070W	1473 nt		13.22	□□□□□ -0.29
CAF16	P43569	DBP2	YNL112W	1641 nt		13.13	□□□□□ -0.31
CAF16	P43569	YBR190W	YBR190W	312 nt		13.1	□□□□□ -0.31
CAF16	P43569	RTC3	YHR087W	336 nt		12.71	□□□□□ -0.37
CAF16	P43569	YCR051W	YCR051W	669 nt		12.7	□□□□□ -0.38
CAF16	P43569	PUT4	YOR348C	1884 nt		12.6	□□□□□ -0.39
CAF16	P43569	SCS3	YGL126W	1143 nt		12.6	□□□□□ -0.39
CAF16	P43569	TRN1	tP(UGG)A	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	SUF9	tP(UGG)F	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	SUF8	tP(UGG)H	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	tP(UGG)L	tP(UGG)L	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	SUF7	tP(UGG)M	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	tP(UGG)N1	tP(UGG)N1	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	tP(UGG)N2	tP(UGG)N2	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	tP(UGG)O1	tP(UGG)O1	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	SUF11	tP(UGG)O2	72 nt		12.45	□□□□□ -0.42
CAF16	P43569	CCC1	YLR220W	969 nt		12.33	□□□□□ -0.44
CAF16	P43569	SPT5	YML010W	3192 nt		12.28	□□□□□ -0.44
CAF16	P43569	RVS167	YDR388W	1449 nt		12.24	□□□□□ -0.45
CAF16	P43569	SSA4	YER103W	1929 nt		12.2	□□□□□ -0.46
CAF16	P43569	YOL085C	YOL085C	342 nt		12.12	□□□□□ -0.47
CAF16	P43569	ARE1	YCR048W	1833 nt		12.1	□□□□□ -0.47
CAF16	P43569	POA1	YBR022W	534 nt		12.05	□□□□□ -0.48
CAF16	P43569	RPP1B	YDL130W	321 nt		12.04	□□□□□ -0.48
CAF16	P43569	SCJ1	YMR214W	1134 nt		12.02	□□□□□ -0.49
CAF16	P43569	BSC6	YOL137W	1494 nt		12.01	□□□□□ -0.49
CAF16	P43569	YHR049C-A	YHR049C-A	297 nt		11.9	□□□□□ -0.5
CAF16	P43569	PKP1	YIL042C	1185 nt		11.9	□□□□□ -0.5
CAF16	P43569	BDF1	YLR399C	2061 nt		11.9	□□□□□ -0.51
CAF16	P43569	SAH1	YER043C	1350 nt		11.74	□□□□□ -0.53
CAF16	P43569	TAT1	YBR069C	1860 nt		11.71	□□□□□ -0.53
CAF16	P43569	URN1	YPR152C	1398 nt		11.7	□□□□□ -0.54
CAF16	P43569	PAC11	YDR488C	1602 nt		11.7	□□□□□ -0.54
CAF16	P43569	OPI9	YLR338W	858 nt		11.69	□□□□□ -0.54
CAF16	P43569	SHR5	YOL110W	714 nt		11.67	□□□□□ -0.54
CAF16	P43569	tP(UGG)O3	tP(UGG)O3	72 nt		11.56	□□□□□ -0.56
CAF16	P43569	DEP1	YAL013W	1218 nt		11.52	□□□□□ -0.57
CAF16	P43569	NVJ2	YPR091C	2313 nt		11.52	□□□□□ -0.57
CAF16	P43569	PET122	YER153C	765 nt		11.49	□□□□□ -0.57
CAF16	P43569	BUD23	YCR047C	828 nt		11.48	□□□□□ -0.57
CAF16	P43569	RPN10	YHR200W	807 nt		11.43	□□□□□ -0.58
CAF16	P43569	MEP2	YNL142W	1500 nt		11.38	□□□□□ -0.59
CAF16	P43569	SCR1	SCR1	522 nt		11.36	□□□□□ -0.59
CAF16	P43569	PUN1	YLR414C	792 nt		11.35	□□□□□ -0.59
CAF16	P43569	YNL208W	YNL208W	600 nt		11.28	□□□□□ -0.6
CAF16	P43569	PTC2	YER089C	1395 nt		11.27	□□□□□ -0.61
CAF16	P43569	NAB2	YGL122C	1578 nt		11.24	□□□□□ -0.61
CAF16	P43569	ATS1	YAL020C	1002 nt		11.23	□□□□□ -0.61
CAF16	P43569	YDJ1	YNL064C	1230 nt		11.23	□□□□□ -0.61
CAF16	P43569	SSA1	YAL005C	1929 nt		11.17	□□□□□ -0.62
CAF16	P43569	DCW1	YKL046C	1350 nt		11.17	□□□□□ -0.62
CAF16	P43569	RRN5	YLR141W	1092 nt		11.14	□□□□□ -0.63
CAF16	P43569	YBR220C	YBR220C	1683 nt		11.14	□□□□□ -0.63
CAF16	P43569	YJR018W	YJR018W	363 nt		11.13	□□□□□ -0.63
CAF16	P43569	GAR1	YHR089C	618 nt		11.06	□□□□□ -0.64
CAF16	P43569	FIS1	YIL065C	468 nt		11.06	□□□□□ -0.64
CAF16	P43569	FPS1	YLL043W	2010 nt		10.99	□□□□□ -0.65
CAF16	P43569	EMI2	YDR516C	1503 nt		10.99	□□□□□ -0.65
CAF16	P43569	DAL1	YIR027C	1383 nt		10.98	□□□□□ -0.65
CAF16	P43569	YPS1	YLR120C	1710 nt		10.96	□□□□□ -0.65
CAF16	P43569	PCH2	YBR186W	1695 nt		10.95	□□□□□ -0.66
CAF16	P43569	GUT2	YIL155C	1950 nt		10.95	□□□□□ -0.66
CAF16	P43569	YER088W-B	YER088W-B	147 nt		10.93	□□□□□ -0.66
CAF16	P43569	FPR4	YLR449W	1179 nt		10.91	□□□□□ -0.66
CAF16	P43569	YMR090W	YMR090W	684 nt		10.91	□□□□□ -0.66
CAF16	P43569	SDH1	YKL148C	1923 nt		10.89	□□□□□ -0.67
CAF16	P43569	PHO4	YFR034C	939 nt		10.86	□□□□□ -0.67
CAF16	P43569	YDL221W	YDL221W	552 nt		10.83	□□□□□ -0.68
CAF16	P43569	INM2	YDR287W	879 nt		10.83	□□□□□ -0.68
CAF16	P43569	RSB1	YOR049C	1065 nt		10.83	□□□□□ -0.68
CAF16	P43569	PIB2	YGL023C	1908 nt		10.83	□□□□□ -0.68
CAF16	P43569	YHR165W-A	YHR165W-A	312 nt		10.82	□□□□□ -0.68
CAF16	P43569	SEC11	YIR022W	504 nt		10.82	□□□□□ -0.68
CAF16	P43569	YJR120W	YJR120W	351 nt		10.82	□□□□□ -0.68
CAF16	P43569	RPP2B	YDR382W	333 nt		10.76	□□□□□ -0.69
CAF16	P43569	YDR095C	YDR095C	411 nt		10.75	□□□□□ -0.69
CAF16	P43569	UME6	YDR207C	2511 nt		10.72	□□□□□ -0.69
CAF16	P43569	TIR1	YER011W	765 nt		10.7	□□□□□ -0.7
CAF16	P43569	NME1	NME1	340 nt		10.7	□□□□□ -0.7
CAF16	P43569	CAC2	YML102W	1407 nt		10.69	□□□□□ -0.7
CAF16	P43569	SCC4	YER147C	1875 nt		10.67	□□□□□ -0.7
CAF16	P43569	PTP1	YDL230W	1008 nt		10.63	□□□□□ -0.71
CAF16	P43569	YBL100C	YBL100C	315 nt		10.61	□□□□□ -0.71
CAF16	P43569	RTF1	YGL244W	1677 nt		10.58	□□□□□ -0.72
CAF16	P43569	IRC15	YPL017C	1500 nt		10.55	□□□□□ -0.72
CAF16	P43569	YSC84	YHR016C	1407 nt		10.54	□□□□□ -0.72
CAF16	P43569	RPP2A	YOL039W	321 nt		10.52	□□□□□ -0.73
CAF16	P43569	YJL225C	YJL225C	5277 nt		10.51	□□□□□ -0.73
CAF16	P43569	YHL050C	YHL050C	2094 nt		10.5	□□□□□ -0.73
CAF16	P43569	PTK1	YKL198C	1989 nt		10.48	□□□□□ -0.73

Retrieved 100 of 7,029 protein–RNA pairs in 6.8 ms