RNA–Protein interactions for RNA: YDR234W

LYS4, Transcript of Homoaconitase, yeast

Gene LYS4, Length 2,082 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LYS4	YDR234W	MRF1	P30775	413 aa	Predicted RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	TPS3	P38426	1054 aa	Known RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	GPD2	P41911	440 aa	Known RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	DIG1	Q03063	452 aa	Known RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	GIR2	Q03768	265 aa	Predicted RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	YLR326W	Q06170	240 aa	Known RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	DAS2	Q12084	232 aa		11.99	□□□□□ -0.49
LYS4	YDR234W	AIM7	Q12156	149 aa		11.99	□□□□□ -0.49
LYS4	YDR234W	RMP1	Q12530	201 aa		11.99	□□□□□ -0.49
LYS4	YDR234W	ECM32	P32644	1121 aa	Known RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	PGM1	P33401	570 aa	Known RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	KTR2	P33550	425 aa		11.99	□□□□□ -0.49
LYS4	YDR234W	YML037C	Q03703	340 aa		11.99	□□□□□ -0.49
LYS4	YDR234W	MLH2	Q07980	695 aa		11.99	□□□□□ -0.49
LYS4	YDR234W	FKS1	P38631	1876 aa	Known RBP	11.99	□□□□□ -0.49
LYS4	YDR234W	SRD1	P09007	221 aa		11.98	□□□□□ -0.49
LYS4	YDR234W	ERG11	P10614	530 aa		11.98	□□□□□ -0.49
LYS4	YDR234W	PTC4	P38089	393 aa		11.98	□□□□□ -0.49
LYS4	YDR234W	SLI15	P38283	698 aa		11.98	□□□□□ -0.49
LYS4	YDR234W	PRP22	P24384	1145 aa	Known RBP	11.98	□□□□□ -0.49
LYS4	YDR234W	RPN3	P40016	523 aa	Known RBP	11.98	□□□□□ -0.49
LYS4	YDR234W	ALD6	P54115	500 aa	Known RBP	11.98	□□□□□ -0.49
LYS4	YDR234W	POB3	Q04636	552 aa	Known RBP	11.98	□□□□□ -0.49
LYS4	YDR234W	FBP1	P09201	348 aa		11.97	□□□□□ -0.49
LYS4	YDR234W	MSH1	P25846	959 aa		11.97	□□□□□ -0.49
LYS4	YDR234W	CWC22	P53333	577 aa	Known RBP	11.97	□□□□□ -0.49
LYS4	YDR234W	SFH1	Q06168	426 aa		11.97	□□□□□ -0.49
LYS4	YDR234W	NCR1	Q12200	1170 aa		11.97	□□□□□ -0.49
LYS4	YDR234W	RPS9B	P05755	195 aa	Known RBP	11.96	□□□□□ -0.49
LYS4	YDR234W	SUV3	P32580	737 aa		11.96	□□□□□ -0.49
LYS4	YDR234W	CNS1	P33313	385 aa		11.96	□□□□□ -0.49
LYS4	YDR234W	SHP1	P34223	423 aa		11.96	□□□□□ -0.49
LYS4	YDR234W	VPS41	P38959	992 aa		11.96	□□□□□ -0.49
LYS4	YDR234W	CTK3	P46963	296 aa	Predicted RBP	11.96	□□□□□ -0.49
LYS4	YDR234W	GDT1	P38301	280 aa	Predicted RBP	11.96	□□□□□ -0.5
LYS4	YDR234W	RGD1	P38339	666 aa		11.96	□□□□□ -0.5
LYS4	YDR234W	SMC3	P47037	1230 aa		11.96	□□□□□ -0.5
LYS4	YDR234W	VID30	P53076	958 aa		11.96	□□□□□ -0.5
LYS4	YDR234W	BTN2	P53286	410 aa		11.96	□□□□□ -0.5
LYS4	YDR234W	URH1	Q04179	340 aa		11.96	□□□□□ -0.5
LYS4	YDR234W	NUR1	Q12066	484 aa		11.96	□□□□□ -0.5
LYS4	YDR234W	TRP2	P00899	507 aa	Known RBP	11.95	□□□□□ -0.5
LYS4	YDR234W	LCB2	P40970	561 aa		11.95	□□□□□ -0.5
LYS4	YDR234W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	11.95	□□□□□ -0.5	not detected
LYS4	YDR234W	YLR297W	Q05899	129 aa		11.95	□□□□□ -0.5
LYS4	YDR234W	MUD2	P36084	527 aa	Known RBP	11.95	□□□□□ -0.5
LYS4	YDR234W	ERC1	P38767	581 aa		11.95	□□□□□ -0.5
LYS4	YDR234W	FPK1	P53739	893 aa		11.95	□□□□□ -0.5
LYS4	YDR234W	PEX29	Q03370	554 aa		11.95	□□□□□ -0.5
LYS4	YDR234W	SUB2	Q07478	446 aa	Known RBP	11.95	□□□□□ -0.5
LYS4	YDR234W	CRD1	Q07560	283 aa		11.95	□□□□□ -0.5
LYS4	YDR234W	NOP6	Q07623	225 aa	Known RBP	11.95	□□□□□ -0.5
LYS4	YDR234W	PCK1	P10963	549 aa		11.94	□□□□□ -0.5
LYS4	YDR234W	CHS2	P14180	963 aa		11.94	□□□□□ -0.5
LYS4	YDR234W	TGL1	P34163	548 aa		11.94	□□□□□ -0.5
LYS4	YDR234W	YJL007C	P47080	104 aa		11.94	□□□□□ -0.5
LYS4	YDR234W	CSR2	Q12734	1121 aa		11.94	□□□□□ -0.5
LYS4	YDR234W	QCR6	P00127	147 aa		11.93	□□□□□ -0.5
LYS4	YDR234W	CDC8	P00572	216 aa		11.93	□□□□□ -0.5
LYS4	YDR234W	KAP114	P53067	1004 aa		11.93	□□□□□ -0.5
LYS4	YDR234W	CNM67	P53865	581 aa	Known RBP	11.93	□□□□□ -0.5
LYS4	YDR234W	DUS3	Q06053	668 aa	Known RBP	11.93	□□□□□ -0.5
LYS4	YDR234W	CSR1	Q06705	408 aa	Known RBP	11.93	□□□□□ -0.5
LYS4	YDR234W	RAD1	P06777	1100 aa		11.93	□□□□□ -0.5
LYS4	YDR234W	SWI6	P09959	803 aa		11.93	□□□□□ -0.5
LYS4	YDR234W	NCS2	P53923	493 aa	Predicted RBP	11.93	□□□□□ -0.5
LYS4	YDR234W	VTI1	Q04338	217 aa		11.93	□□□□□ -0.5
LYS4	YDR234W	PHM6	Q05637	104 aa		11.93	□□□□□ -0.5
LYS4	YDR234W	PGK1	P00560	416 aa	Known RBP	11.92	□□□□□ -0.5
LYS4	YDR234W	THS1	P04801	734 aa	Known RBP	11.92	□□□□□ -0.5
LYS4	YDR234W	SPT2	P06843	333 aa	Predicted RBP	11.92	□□□□□ -0.5
LYS4	YDR234W	CLB5	P30283	435 aa		11.92	□□□□□ -0.5
LYS4	YDR234W	DEP1	P31385	405 aa		11.92	□□□□□ -0.5
LYS4	YDR234W	UBP13	P38187	747 aa		11.92	□□□□□ -0.5
LYS4	YDR234W	SDS3	P40505	327 aa		11.92	□□□□□ -0.5
LYS4	YDR234W	MAD1	P40957	749 aa		11.92	□□□□□ -0.5
LYS4	YDR234W	YGL140C	P53120	1219 aa		11.92	□□□□□ -0.5
LYS4	YDR234W	YOR223W	Q12015	292 aa		11.92	□□□□□ -0.5
LYS4	YDR234W	FIS1	P40515	155 aa		11.91	□□□□□ -0.5
LYS4	YDR234W	YML082W	Q04533	649 aa	Known RBP	11.91	□□□□□ -0.5
LYS4	YDR234W	SPH1	Q06160	661 aa		11.91	□□□□□ -0.5
LYS4	YDR234W	ZRT2	Q12436	422 aa		11.91	□□□□□ -0.5
LYS4	YDR234W	TOM1	Q03280	3268 aa		11.91	□□□□□ -0.5
LYS4	YDR234W	YGR021W	P53212	290 aa		11.91	□□□□□ -0.5
LYS4	YDR234W	MRS2	Q01926	470 aa		11.91	□□□□□ -0.5
LYS4	YDR234W	SLX4	Q12098	748 aa		11.91	□□□□□ -0.5
LYS4	YDR234W	PHO8	P11491	566 aa		11.9	□□□□□ -0.5
LYS4	YDR234W	CDC48	P25694	835 aa	Known RBP	11.9	□□□□□ -0.5
LYS4	YDR234W	YKL050C	P35736	922 aa		11.9	□□□□□ -0.5
LYS4	YDR234W	SVF1	Q05515	481 aa		11.9	□□□□□ -0.5
LYS4	YDR234W	DBP5	P20449	482 aa	Known RBP	11.9	□□□□□ -0.51
LYS4	YDR234W	GCG1	P32656	232 aa	Known RBP	11.9	□□□□□ -0.51
LYS4	YDR234W	TIM8	P57744	87 aa		11.9	□□□□□ -0.51
LYS4	YDR234W	PTA1	Q01329	785 aa	Predicted RBP	11.9	□□□□□ -0.51
LYS4	YDR234W	YDR278C	Q05612	105 aa		11.9	□□□□□ -0.51
LYS4	YDR234W	OMS1	Q06668	471 aa		11.9	□□□□□ -0.51
LYS4	YDR234W	TSR1	Q07381	788 aa	Known RBP	11.9	□□□□□ -0.51
LYS4	YDR234W	RUD3	Q12234	484 aa	Known RBP	11.9	□□□□□ -0.51
LYS4	YDR234W	GAL2	P13181	574 aa		11.89	□□□□□ -0.51
LYS4	YDR234W	CLB1	P24868	471 aa		11.89	□□□□□ -0.51

Retrieved 100 of 5,963 RNA–protein pairs in 78.2 ms