RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Igsf1Q7TQA1 1317 aa16.18■□□□□ 0.18
Nup88-201ENSMUST00000035283 Zc3h13E9Q784 1729 aaKnown RBP16.17■□□□□ 0.18
Nup88-201ENSMUST00000035283 Cavin1O54724 392 aa16.17■□□□□ 0.18
Nup88-201ENSMUST00000035283 Hvcn1Q3U2S8 269 aa16.17■□□□□ 0.18
Nup88-201ENSMUST00000035283 Zscan22Q8BGS5 496 aa16.17■□□□□ 0.18
Nup88-201ENSMUST00000035283 Rad50P70388 1312 aa16.17■□□□□ 0.18
Nup88-201ENSMUST00000035283 Sox12Q04890 314 aa16.17■□□□□ 0.18
Nup88-201ENSMUST00000035283 Utp3Q9JI13 469 aaKnown RBP16.17■□□□□ 0.18
Nup88-201ENSMUST00000035283 Fam184aE9PW83 1143 aa16.16■□□□□ 0.18
Nup88-201ENSMUST00000035283 Tlr7P58681 1050 aa16.16■□□□□ 0.18
Nup88-201ENSMUST00000035283 Cabp4Q8VHC5 271 aa16.16■□□□□ 0.18
Nup88-201ENSMUST00000035283 Ier5O89113 308 aa16.16■□□□□ 0.18
Nup88-201ENSMUST00000035283 Ccdc178Q8CDV0 866 aa16.16■□□□□ 0.18
Nup88-201ENSMUST00000035283 Ube2hP62257 183 aa16.15■□□□□ 0.18
Nup88-201ENSMUST00000035283 Slc4a10Q5DTL9 1118 aa16.15■□□□□ 0.18
Nup88-201ENSMUST00000035283 EspnlQ3UYR4 1005 aa16.14■□□□□ 0.18
Nup88-201ENSMUST00000035283 Rbm42Q91V81 474 aaKnown RBP16.14■□□□□ 0.18
Nup88-201ENSMUST00000035283 Grpel1Q99LP6 217 aa16.14■□□□□ 0.18
Nup88-201ENSMUST00000035283 Pnpla7A2AJ88 1352 aa16.14■□□□□ 0.17
Nup88-201ENSMUST00000035283 Atf5O70191 283 aa16.14■□□□□ 0.17
Nup88-201ENSMUST00000035283 Syt1P46096 421 aa16.14■□□□□ 0.17
Nup88-201ENSMUST00000035283 Smc3Q9CW03 1217 aaKnown RBP16.14■□□□□ 0.17
Nup88-201ENSMUST00000035283 Cfap73J3QPZ5 306 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Cd22P35329 862 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Usp48Q3V0C5 1052 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Rsph4aQ8BYM7 716 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Dhx30Q99PU8 1217 aaKnown RBP16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Cps1Q8C196 1500 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Tnrc6bQ8BKI2 1810 aaKnown RBP16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Dip2bQ3UH60 1574 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Wdr24Q8CFJ9 790 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Brf1Q8CFK2 676 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 SrrtQ99MR6 875 aaKnown RBP16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 HypkQ9CR41 129 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 CemipQ8BI06 1361 aa16.13■□□□□ 0.17
Nup88-201ENSMUST00000035283 Q3UJC8 639 aa16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 Mmel1Q9JLI3 765 aa16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 Mad1l1Q9WTX8 717 aaKnown RBP16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 Gm21190A0A0G2JGJ6 266 aa16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 MsnP26041 577 aaKnown RBP16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 Dennd6aQ8BH65 605 aa16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 Med4Q9CQA5 270 aa16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 Add2Q9QYB8 725 aa16.12■□□□□ 0.17
Nup88-201ENSMUST00000035283 Zap70P43404 618 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Zbtb45Q52KG4 520 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Snx13Q6PHS6 957 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Kcnf1Q7TSH7 493 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Tti2Q8BGV4 512 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Nlgn1Q99K10 843 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Kank4Q6P9J5 1016 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Cdca7lQ922M5 438 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Slit2Q9R1B9 1521 aa16.11■□□□□ 0.17
Nup88-201ENSMUST00000035283 Map3k13Q1HKZ5 959 aa16.1■□□□□ 0.17
Nup88-201ENSMUST00000035283 Myo5bP21271 1818 aa16.1■□□□□ 0.17
Nup88-201ENSMUST00000035283 Camta1A2A891 1682 aa16.1■□□□□ 0.17
Nup88-201ENSMUST00000035283 Brpf3B2KF05 1204 aaKnown RBP16.1■□□□□ 0.17
Nup88-201ENSMUST00000035283 Brpf1B2RRD7 1212 aa16.1■□□□□ 0.17
Nup88-201ENSMUST00000035283 Exoc6bA6H5Z3 810 aa16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 Ythdc1E9Q5K9 736 aaKnown RBP16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 Kif3aP28741 701 aa16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 Gpatch11Q3UFS4 262 aa16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 Fam13bQ8K2H3 851 aa16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 Ccdc94Q9D6J3 314 aa16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 Fbxo2Q80UW2 297 aa16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 NalcnQ8BXR5 1738 aa16.09■□□□□ 0.17
Nup88-201ENSMUST00000035283 Ccdc66Q6NS45 935 aa16.08■□□□□ 0.17
Nup88-201ENSMUST00000035283 Sf3a1Q8K4Z5 791 aaKnown RBP16.08■□□□□ 0.17
Nup88-201ENSMUST00000035283 Top1mtQ8R4U6 593 aa16.08■□□□□ 0.17
Nup88-201ENSMUST00000035283 Znf335A2A5K6 1337 aa16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 EzrP26040 586 aaKnown RBP16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 Cct4P80315 539 aaKnown RBP16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 Ifit2Q64112 472 aa16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 Tmem132eQ6IEE6 982 aa16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 Ppp1r18Q8BQ30 594 aa16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 Tsr2Q8C8T8 191 aa16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 Tceal9Q9DD24 104 aa16.08■□□□□ 0.16
Nup88-201ENSMUST00000035283 Spata31d1bE9QA57 1361 aa16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 Pkp1P97350 728 aaKnown RBP16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 Nup88Q8CEC0 753 aaKnown RBP16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 Mrpl50Q8VDT9 159 aaKnown RBP16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 Sirt1Q923E4 737 aa16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 CebpzP53569 1052 aaKnown RBP16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 Idi1P58044 227 aa16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 CoilQ5SU73 570 aa16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 Add3Q9QYB5 706 aaKnown RBP16.07■□□□□ 0.16
Nup88-201ENSMUST00000035283 Ubr1O70481 1757 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Cfdp1O88271 295 aaKnown RBP16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Tgfb1i1Q62219 461 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Oxsr1Q6P9R2 527 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Tceanc2Q8R2M0 207 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Q9D9S1 216 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Map2P20357 1828 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Pik3c2aQ61194 1686 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Ppfia1B2RXQ2 1266 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Pa2g4P50580 394 aaKnown RBP16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Usp25P57080 1055 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Cbx1P83917 185 aaKnown RBP16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Nxf2Q4ZGD8 691 aa16.06■□□□□ 0.16
Nup88-201ENSMUST00000035283 Hoxc9P09633 260 aa16.05■□□□□ 0.16
Nup88-201ENSMUST00000035283 Fam228bQ497Q6 232 aa16.05■□□□□ 0.16
Retrieved 100 of 22,080 RNA–protein pairs in 36.7 ms