Protein–RNA interactions for Protein: O70481

Ubr1, E3 ubiquitin-protein ligase UBR1, mousemouse

Predictions only

Length 1,757 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1O70481 Gm25239-201ENSMUST00000174915 86 ntBASIC52,38■■■■■ 5,98
Ubr1O70481 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC48,66■■■■■ 5,38
Ubr1O70481 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC47,54■■■■■ 5,2
Ubr1O70481 Gm15042-201ENSMUST00000120212 883 ntBASIC45,68■■■■■ 4,9
Ubr1O70481 Gm24109-201ENSMUST00000175489 103 ntBASIC45,68■■■■■ 4,9
Ubr1O70481 Gm15045-201ENSMUST00000117359 883 ntBASIC44,92■■■■■ 4,78
Ubr1O70481 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC44,28■■■■■ 4,68
Ubr1O70481 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC44,22■■■■■ 4,67
Ubr1O70481 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC44,2■■■■■ 4,67
Ubr1O70481 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC43,74■■■■■ 4,59
Ubr1O70481 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC43,73■■■■■ 4,59
Ubr1O70481 Gm23366-201ENSMUST00000175022 89 ntBASIC43,62■■■■■ 4,57
Ubr1O70481 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC43,35■■■■■ 4,53
Ubr1O70481 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC42,66■■■■■ 4,42
Ubr1O70481 AC153911.1-202ENSMUST00000218534 1034 ntBASIC42,46■■■■■ 4,39
Ubr1O70481 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC42,44■■■■■ 4,38
Ubr1O70481 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC42,16■■■■■ 4,34
Ubr1O70481 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC41,97■■■■■ 4,31
Ubr1O70481 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC41,92■■■■■ 4,3
Ubr1O70481 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC41,9■■■■■ 4,3
Ubr1O70481 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC41,88■■■■■ 4,29
Ubr1O70481 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC41,87■■■■■ 4,29
Ubr1O70481 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC41,81■■■■■ 4,28
Ubr1O70481 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC41,66■■■■■ 4,26
Ubr1O70481 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC41,62■■■■■ 4,25
Ubr1O70481 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC41,5■■■■■ 4,23
Ubr1O70481 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC41,41■■■■■ 4,22
Ubr1O70481 Gm25238-201ENSMUST00000174914 89 ntBASIC41,38■■■■■ 4,22
Ubr1O70481 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC41,37■■■■■ 4,21
Ubr1O70481 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC41,31■■■■■ 4,2
Ubr1O70481 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC41,3■■■■■ 4,2
Ubr1O70481 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC41,27■■■■■ 4,2
Ubr1O70481 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC41,2■■■■■ 4,19
Ubr1O70481 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC41,02■■■■■ 4,16
Ubr1O70481 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC40,79■■■■■ 4,12
Ubr1O70481 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC40,67■■■■■ 4,1
Ubr1O70481 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC40,61■■■■■ 4,09
Ubr1O70481 Psd-208ENSMUST00000224556 2034 ntBASIC40,54■■■■■ 4,08
Ubr1O70481 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC40,36■■■■■ 4,05
Ubr1O70481 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC40,26■■■■■ 4,04
Ubr1O70481 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC40,26■■■■■ 4,04
Ubr1O70481 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC40,05■■■■■ 4
Ubr1O70481 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC40,01■■■■■ 4
Ubr1O70481 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC40■■■■□ 3,99
Ubr1O70481 Gm27325-201ENSMUST00000175467 74 ntBASIC39,97■■■■□ 3,99
Ubr1O70481 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC39,89■■■■□ 3,98
Ubr1O70481 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC39,7■■■■□ 3,95
Ubr1O70481 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC39,67■■■■□ 3,94
Ubr1O70481 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC39,52■■■■□ 3,92
Ubr1O70481 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC39,51■■■■□ 3,92
Ubr1O70481 Gm25262-201ENSMUST00000174934 133 ntBASIC39,46■■■■□ 3,91
Ubr1O70481 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC39,42■■■■□ 3,9
Ubr1O70481 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC39,37■■■■□ 3,89
Ubr1O70481 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC39,31■■■■□ 3,88
Ubr1O70481 Rab21-202ENSMUST00000218831 843 ntBASIC39,28■■■■□ 3,88
Ubr1O70481 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC39,28■■■■□ 3,88
Ubr1O70481 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC39,23■■■■□ 3,87
Ubr1O70481 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC39,14■■■■□ 3,86
Ubr1O70481 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC39,11■■■■□ 3,85
Ubr1O70481 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC39,1■■■■□ 3,85
Ubr1O70481 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC39,03■■■■□ 3,84
Ubr1O70481 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC39,01■■■■□ 3,84
Ubr1O70481 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC39■■■■□ 3,83
Ubr1O70481 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC38,96■■■■□ 3,83
Ubr1O70481 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC38,94■■■■□ 3,82
Ubr1O70481 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC38,92■■■■□ 3,82
Ubr1O70481 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC38,91■■■■□ 3,82
Ubr1O70481 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC38,9■■■■□ 3,82
Ubr1O70481 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC38,89■■■■□ 3,82
Ubr1O70481 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC38,88■■■■□ 3,81
Ubr1O70481 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC38,82■■■■□ 3,8
Ubr1O70481 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC38,67■■■■□ 3,78
Ubr1O70481 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC38,63■■■■□ 3,77
Ubr1O70481 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC38,6■■■■□ 3,77
Ubr1O70481 Gm26115-201ENSMUST00000175605 87 ntBASIC38,59■■■■□ 3,77
Ubr1O70481 Gm8109-201ENSMUST00000194076 746 ntBASIC38,59■■■■□ 3,77
Ubr1O70481 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC38,58■■■■□ 3,77
Ubr1O70481 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC38,52■■■■□ 3,76
Ubr1O70481 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC38,5■■■■□ 3,75
Ubr1O70481 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC38,48■■■■□ 3,75
Ubr1O70481 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC38,39■■■■□ 3,74
Ubr1O70481 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC38,37■■■■□ 3,73
Ubr1O70481 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC38,35■■■■□ 3,73
Ubr1O70481 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC38,32■■■■□ 3,73
Ubr1O70481 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC38,3■■■■□ 3,72
Ubr1O70481 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC38,29■■■■□ 3,72
Ubr1O70481 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC38,28■■■■□ 3,72
Ubr1O70481 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC38,26■■■■□ 3,72
Ubr1O70481 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC38,23■■■■□ 3,71
Ubr1O70481 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC38,21■■■■□ 3,71
Ubr1O70481 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC38,21■■■■□ 3,71
Ubr1O70481 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC38,17■■■■□ 3,7
Ubr1O70481 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC38,15■■■■□ 3,7
Ubr1O70481 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC38,08■■■■□ 3,69
Ubr1O70481 Gm17082-201ENSMUST00000166043 1091 ntBASIC38,06■■■■□ 3,68
Ubr1O70481 Gm42596-201ENSMUST00000196305 1958 ntBASIC38,02■■■■□ 3,68
Ubr1O70481 Gm10524-201ENSMUST00000181931 1893 ntBASIC38■■■■□ 3,67
Ubr1O70481 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC38■■■■□ 3,67
Ubr1O70481 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC37,98■■■■□ 3,67
Ubr1O70481 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC37,95■■■■□ 3,67
Retrieved 100 of 76,532 protein–RNA pairs in 20,6 ms