RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 NischQ80TM9 1593 aa24.76■■□□□ 1.55
Nup88-201ENSMUST00000035283 Abcc9P70170 1546 aa24.03■■□□□ 1.44
Nup88-201ENSMUST00000035283 Gm35339A0A140LHH9 1649 aa23.96■■□□□ 1.43
Nup88-201ENSMUST00000035283 Rhox8Q6VSS7 320 aa23.59■■□□□ 1.37
Nup88-201ENSMUST00000035283 Abcc8B2RUS7 1588 aa23.38■■□□□ 1.33
Nup88-201ENSMUST00000035283 Rtl1Q7M732 1744 aa23.25■■□□□ 1.31
Nup88-201ENSMUST00000035283 Ccdc180J3QNE4 1664 aa23.03■■□□□ 1.28
Nup88-201ENSMUST00000035283 Rpgrip1Q9EPQ2 1331 aa22.64■■□□□ 1.21
Nup88-201ENSMUST00000035283 Zcchc6Q5BLK4 1491 aaKnown RBP22.52■■□□□ 1.2
Nup88-201ENSMUST00000035283 Acin1Q9JIX8 1338 aaKnown RBP22.26■■□□□ 1.15
Nup88-201ENSMUST00000035283 Ehmt2Q9Z148 1263 aaKnown RBP22.17■■□□□ 1.14
Nup88-201ENSMUST00000035283 HrcG5E8J6 738 aa21.98■■□□□ 1.11
Nup88-201ENSMUST00000035283 Ccdc136Q3TVA9 1136 aa21.89■■□□□ 1.09
Nup88-201ENSMUST00000035283 Dcaf1Q80TR8 1506 aa21.86■■□□□ 1.09
Nup88-201ENSMUST00000035283 Rb1cc1Q9ESK9 1588 aa21.73■■□□□ 1.07
Nup88-201ENSMUST00000035283 Pcgf6Q99NA9 353 aa21.68■■□□□ 1.06
Nup88-201ENSMUST00000035283 ScribQ80U72 1612 aa21.6■■□□□ 1.05
Nup88-201ENSMUST00000035283 Trim41Q5NCC3 630 aa21.53■■□□□ 1.04
Nup88-201ENSMUST00000035283 Baz1aO88379 1555 aa21.45■■□□□ 1.02
Nup88-201ENSMUST00000035283 Kdm5dQ62240 1548 aa21.31■■□□□ 1
Nup88-201ENSMUST00000035283 Supt5hO55201 1082 aaKnown RBP21.24■□□□□ 0.99
Nup88-201ENSMUST00000035283 Cep164Q5DU05 1446 aa21.2■□□□□ 0.98
Nup88-201ENSMUST00000035283 Smarca2Q6DIC0 1577 aa21.02■□□□□ 0.96
Nup88-201ENSMUST00000035283 NacadQ5SWP3 1504 aa21■□□□□ 0.95
Nup88-201ENSMUST00000035283 Chic1Q8CBW7 227 aa20.92■□□□□ 0.94
Nup88-201ENSMUST00000035283 Gab3Q8BSM5 595 aa20.89■□□□□ 0.93
Nup88-201ENSMUST00000035283 Neurod1Q60867 357 aa20.87■□□□□ 0.93
Nup88-201ENSMUST00000035283 Rsf1E9PWW9 1441 aaKnown RBP20.87■□□□□ 0.93
Nup88-201ENSMUST00000035283 Crybg2B7ZCC2 1516 aa20.86■□□□□ 0.93
Nup88-201ENSMUST00000035283 Cngb1E1AZ71 1325 aa20.84■□□□□ 0.93
Nup88-201ENSMUST00000035283 Zeb1Q64318 1117 aa20.84■□□□□ 0.93
Nup88-201ENSMUST00000035283 Mier1Q5UAK0 511 aa20.7■□□□□ 0.9
Nup88-201ENSMUST00000035283 Ccdc88bQ4QRL3 1481 aa20.68■□□□□ 0.9
Nup88-201ENSMUST00000035283 NefmP08553 848 aa20.65■□□□□ 0.9
Nup88-201ENSMUST00000035283 Sall2Q9QX96 1004 aa20.58■□□□□ 0.89
Nup88-201ENSMUST00000035283 Sycp2Q9CUU3 1500 aa20.56■□□□□ 0.88
Nup88-201ENSMUST00000035283 Brd4Q9ESU6 1400 aaKnown RBP20.55■□□□□ 0.88
Nup88-201ENSMUST00000035283 Cecr2E9Q2Z1 1453 aa20.53■□□□□ 0.88
Nup88-201ENSMUST00000035283 Golga3P55937 1487 aa20.52■□□□□ 0.87
Nup88-201ENSMUST00000035283 Synj1Q8CHC4 1574 aa20.4■□□□□ 0.86
Nup88-201ENSMUST00000035283 Las1lA2BE28 776 aaKnown RBP20.31■□□□□ 0.84
Nup88-201ENSMUST00000035283 Esf1Q3V1V3 845 aaKnown RBP20.29■□□□□ 0.84
Nup88-201ENSMUST00000035283 UbtfP25976 765 aaKnown RBP20.28■□□□□ 0.84
Nup88-201ENSMUST00000035283 Aebp2Q9Z248 504 aaKnown RBP20.25■□□□□ 0.83
Nup88-201ENSMUST00000035283 Anks4bQ8K3X6 423 aa20.24■□□□□ 0.83
Nup88-201ENSMUST00000035283 CftrP26361 1476 aa20.21■□□□□ 0.83
Nup88-201ENSMUST00000035283 Wdr66E9Q743 1299 aa20.2■□□□□ 0.82
Nup88-201ENSMUST00000035283 Csrnp3P59055 597 aa20.19■□□□□ 0.82
Nup88-201ENSMUST00000035283 1700123L14RikQ3V2K7 440 aa20.19■□□□□ 0.82
Nup88-201ENSMUST00000035283 Top2bQ64511 1612 aa20.17■□□□□ 0.82
Nup88-201ENSMUST00000035283 BicraF8VPZ9 1578 aa20.1■□□□□ 0.81
Nup88-201ENSMUST00000035283 Ppargc1bQ8VHJ7 1014 aa20.09■□□□□ 0.81
Nup88-201ENSMUST00000035283 Rapgef2Q8CHG7 1496 aa20.06■□□□□ 0.8
Nup88-201ENSMUST00000035283 Cc2d2aQ8CFW7 1633 aa20.04■□□□□ 0.8
Nup88-201ENSMUST00000035283 ClspnQ80YR7 1315 aa20.02■□□□□ 0.79
Nup88-201ENSMUST00000035283 Cdk11bP24788 784 aaKnown RBP20■□□□□ 0.79
Nup88-201ENSMUST00000035283 Myt1lP97500 1187 aa19.99■□□□□ 0.79
Nup88-201ENSMUST00000035283 Nop58Q6DFW4 536 aaKnown RBP19.99■□□□□ 0.79
Nup88-201ENSMUST00000035283 Cttnbp2B9EJA2 1648 aa19.97■□□□□ 0.79
Nup88-201ENSMUST00000035283 Cep162Q6ZQ06 1403 aa19.92■□□□□ 0.78
Nup88-201ENSMUST00000035283 TonslQ6NZL6 1363 aa19.87■□□□□ 0.77
Nup88-201ENSMUST00000035283 Top2aQ01320 1528 aaKnown RBP19.87■□□□□ 0.77
Nup88-201ENSMUST00000035283 Fmn1Q05860 1466 aa19.85■□□□□ 0.77
Nup88-201ENSMUST00000035283 Plekhg3Q4VAC9 1341 aa19.8■□□□□ 0.76
Nup88-201ENSMUST00000035283 Aplp2Q06335 707 aa19.78■□□□□ 0.76
Nup88-201ENSMUST00000035283 Npm2Q80W85 207 aa19.77■□□□□ 0.75
Nup88-201ENSMUST00000035283 Smarca4Q3TKT4 1613 aaKnown RBP19.75■□□□□ 0.75
Nup88-201ENSMUST00000035283 Clip1Q922J3 1391 aa19.74■□□□□ 0.75
Nup88-201ENSMUST00000035283 Gm38655A0A286YDK6 273 aa19.74■□□□□ 0.75
Nup88-201ENSMUST00000035283 Ncapd3Q6ZQK0 1506 aa19.67■□□□□ 0.74
Nup88-201ENSMUST00000035283 CenpbP27790 599 aa19.61■□□□□ 0.73
Nup88-201ENSMUST00000035283 Eif4g1Q6NZJ6 1600 aaKnown RBP19.6■□□□□ 0.73
Nup88-201ENSMUST00000035283 Eid3Q3V124 375 aa19.55■□□□□ 0.72
Nup88-201ENSMUST00000035283 Iqgap2Q3UQ44 1575 aa19.47■□□□□ 0.71
Nup88-201ENSMUST00000035283 Ap3b1Q9Z1T1 1105 aa19.47■□□□□ 0.71
Nup88-201ENSMUST00000035283 Arhgap35Q91YM2 1499 aa19.46■□□□□ 0.71
Nup88-201ENSMUST00000035283 Arap1Q4LDD4 1452 aa19.44■□□□□ 0.7
Nup88-201ENSMUST00000035283 Kdm5bQ80Y84 1544 aa19.42■□□□□ 0.7
Nup88-201ENSMUST00000035283 Hnrnpul2Q00PI9 745 aaKnown RBP19.42■□□□□ 0.7
Nup88-201ENSMUST00000035283 PtprkP35822 1457 aa19.41■□□□□ 0.7
Nup88-201ENSMUST00000035283 Myt1Q8CFC2 1127 aa19.4■□□□□ 0.7
Nup88-201ENSMUST00000035283 Eea1Q8BL66 1411 aa19.39■□□□□ 0.69
Nup88-201ENSMUST00000035283 SafbD3YXK2 937 aaKnown RBP19.37■□□□□ 0.69
Nup88-201ENSMUST00000035283 Mapk8ip2Q9ERE9 830 aa19.34■□□□□ 0.69
Nup88-201ENSMUST00000035283 TnnQ80Z71 1560 aa19.33■□□□□ 0.69
Nup88-201ENSMUST00000035283 Setd5Q5XJV7 1441 aa19.32■□□□□ 0.68
Nup88-201ENSMUST00000035283 Arhgef5E9Q7D5 1581 aa19.31■□□□□ 0.68
Nup88-201ENSMUST00000035283 NrkQ9R0G8 1455 aa19.3■□□□□ 0.68
Nup88-201ENSMUST00000035283 Il27Q8K3I6 234 aa19.28■□□□□ 0.68
Nup88-201ENSMUST00000035283 Ccdc18Q640L5 1455 aa19.27■□□□□ 0.68
Nup88-201ENSMUST00000035283 Fam71e1A1L3C1 212 aa19.24■□□□□ 0.67
Nup88-201ENSMUST00000035283 Tnnt3Q9QZ47 272 aa19.24■□□□□ 0.67
Nup88-201ENSMUST00000035283 Atad2bE9Q166 1460 aaKnown RBP19.22■□□□□ 0.67
Nup88-201ENSMUST00000035283 Baz1bQ9Z277 1479 aa19.22■□□□□ 0.67
Nup88-201ENSMUST00000035283 Rpap1Q80TE0 1409 aa19.2■□□□□ 0.66
Nup88-201ENSMUST00000035283 Tiam1Q60610 1591 aa19.17■□□□□ 0.66
Nup88-201ENSMUST00000035283 AqrQ8CFQ3 1481 aaKnown RBP19.17■□□□□ 0.66
Nup88-201ENSMUST00000035283 BlmO88700 1416 aa19.16■□□□□ 0.66
Nup88-201ENSMUST00000035283 Shroom4Q1W617 1475 aa19.15■□□□□ 0.66
Nup88-201ENSMUST00000035283 TchhA0A0B4J1F9 1599 aa19.15■□□□□ 0.66
Retrieved 100 of 22,080 RNA–protein pairs in 8.3 ms