RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	3.8	□□□□□ -1.8	not detected
PEX1	YKL197C	EXO84	P38261	753 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	TOM71	P38825	639 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	RRP8	P38961	392 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	FMP10	P40098	244 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	SUM1	P46676	1062 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	PTK2	P47116	818 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	YGR016W	P53209	190 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	PXR1	P53335	271 aa	Predicted RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	OYE2	Q03558	400 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	SPP382	Q06411	708 aa	Predicted RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	YDL176W	Q12027	708 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	FOB1	O13329	566 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	THR4	P16120	514 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	MET22	P32179	357 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	APL2	P36000	726 aa	Predicted RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	ERC1	P38767	581 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	RSM25	P40496	264 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	YIR042C	P40586	236 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	UTP13	Q05946	817 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	ISR1	Q06098	443 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	VMR1	P38735	1592 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	HOM3	P10869	527 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	AAD3	P25612	363 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	TIF3	P34167	436 aa	Known RBP	3.79	□□□□□ -1.8
PEX1	YKL197C	SWH1	P35845	1188 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	APE4	P38821	490 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	YTA6	P40328	754 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	IAH1	P41734	238 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	YMR111C	Q04461	462 aa	Predicted RBP	3.79	□□□□□ -1.8
PEX1	YKL197C	HMI1	Q12039	706 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	SLX4	Q12098	748 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	TY1B-NL2	Q99337	1749 aa	Known RBP	3.79	□□□□□ -1.8
PEX1	YKL197C	MPH2	P0CD99	609 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	SWC3	P31376	625 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	APD1	P38281	316 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	RRF1	P38771	230 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	CHZ1	P40019	153 aa	Predicted RBP	3.79	□□□□□ -1.8
PEX1	YKL197C	AAD14	P42884	376 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	LAM5	P43560	674 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	ALG2	P43636	503 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	SRB8	P25648	1427 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	SEC15	P22224	910 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	SSZ1	P38788	538 aa	Known RBP	3.79	□□□□□ -1.8
PEX1	YKL197C	MXR1	P40029	184 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	SPR3	P41901	512 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	TIM54	P47045	478 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	ACF4	P47129	309 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	YGR153W	P48238	217 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	INP52	P50942	1183 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	YLH47	Q06493	454 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	GRC3	Q07845	632 aa		3.79	□□□□□ -1.8
PEX1	YKL197C	LEU1	P07264	779 aa	Known RBP	3.78	□□□□□ -1.8
PEX1	YKL197C	HEM3	P28789	327 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	SMY1	P32364	656 aa	Known RBP	3.78	□□□□□ -1.8
PEX1	YKL197C	SOH1	P38633	127 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	OTU2	P38747	307 aa	Known RBP	3.78	□□□□□ -1.8
PEX1	YKL197C	TAP42	Q04372	366 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	CIR2	Q08822	631 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	RTC1	Q08281	1341 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	CIT2	P08679	460 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	OCA4	P25366	362 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	DPH5	P32469	300 aa	Predicted RBP	3.78	□□□□□ -1.8
PEX1	YKL197C	PRS1	P32895	427 aa	Known RBP	3.78	□□□□□ -1.8
PEX1	YKL197C	ATG14	P38270	344 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	YRB1	P41920	201 aa	Known RBP	3.78	□□□□□ -1.8
PEX1	YKL197C	SHE4	P51534	789 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	DFG5	Q05031	458 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	HDA3	Q06623	655 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	TY1A-DR3	Q12441	440 aa		3.78	□□□□□ -1.8
PEX1	YKL197C	IML1	P47170	1584 aa		3.78	□□□□□ -1.81
PEX1	YKL197C	EUG1	P32474	517 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	SAS3	P34218	831 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	YBL028C	P38202	106 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	OLA1	P38219	394 aa	Known RBP	3.77	□□□□□ -1.81
PEX1	YKL197C	SHC1	P39000	512 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	SXM1	Q04175	944 aa	Known RBP	3.77	□□□□□ -1.81
PEX1	YKL197C	RAD33	Q04231	177 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	VMS1	Q04311	632 aa	Known RBP	3.77	□□□□□ -1.81
PEX1	YKL197C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	3.77	□□□□□ -1.81	not detected
PEX1	YKL197C	MCD1	Q12158	566 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	MER1	P16523	270 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	RPC31	P17890	251 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	PDI1	P17967	522 aa	Known RBP	3.77	□□□□□ -1.81
PEX1	YKL197C	RAD16	P31244	790 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	HIR2	P32480	875 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	PTR2	P32901	601 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	SSN3	P39073	555 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	SLN1	P39928	1220 aa	Predicted RBP	3.77	□□□□□ -1.81
PEX1	YKL197C	ATG3	P40344	310 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	MPH1	P40562	993 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	ALG12	P53730	551 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	ALF1	P53904	254 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	YPQ2	Q06328	317 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	AOS1	Q06624	347 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	GNT1	Q12096	491 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	PET494	P07390	489 aa	Predicted RBP	3.77	□□□□□ -1.81
PEX1	YKL197C	ATE1	P16639	503 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	ROX1	P25042	368 aa		3.77	□□□□□ -1.81
PEX1	YKL197C	PHO84	P25297	587 aa	Known RBP	3.77	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 102.9 ms