RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	MTC1	P47018	478 aa	Known RBP	7.78	□□□□□ -1.16
PEX1	YKL197C	DRS1	P32892	752 aa	Known RBP	7.5	□□□□□ -1.21
PEX1	YKL197C	DIP2	Q12220	943 aa	Predicted RBP	6.5	□□□□□ -1.37
PEX1	YKL197C	FAP1	P53971	965 aa		6.49	□□□□□ -1.37
PEX1	YKL197C	AVT3	P36062	692 aa		6.47	□□□□□ -1.37
PEX1	YKL197C	PRI1	P10363	409 aa		6.43	□□□□□ -1.38
PEX1	YKL197C	BFR2	Q06631	534 aa	Known RBP	6.34	□□□□□ -1.4
PEX1	YKL197C	RPG1	P38249	964 aa	Known RBP	6.27	□□□□□ -1.41
PEX1	YKL197C	ISW2	Q08773	1120 aa		6.26	□□□□□ -1.41
PEX1	YKL197C	AAD16	Q02895	342 aa		6.25	□□□□□ -1.41
PEX1	YKL197C	PRY3	P47033	881 aa		6.14	□□□□□ -1.43
PEX1	YKL197C	RSE1	Q04693	1361 aa	Known RBP	6.13	□□□□□ -1.43
PEX1	YKL197C	YCK3	P39962	524 aa		6.13	□□□□□ -1.43
PEX1	YKL197C	TSR3	Q12094	313 aa	Known RBP	6.03	□□□□□ -1.44
PEX1	YKL197C	RQC2	Q12532	1038 aa	Known RBP	5.98	□□□□□ -1.45
PEX1	YKL197C	RPL17A	P05740	184 aa	Known RBP	5.93	□□□□□ -1.46
PEX1	YKL197C	RPL17B	P46990	184 aa	Known RBP	5.93	□□□□□ -1.46
PEX1	YKL197C	TFA1	P36100	482 aa		5.92	□□□□□ -1.46
PEX1	YKL197C	SPT21	P35209	758 aa		5.88	□□□□□ -1.47
PEX1	YKL197C	REB1	P21538	810 aa		5.81	□□□□□ -1.48
PEX1	YKL197C	HAA1	Q12753	694 aa	Known RBP	5.77	□□□□□ -1.49
PEX1	YKL197C	YKR023W	P36119	530 aa	Known RBP	5.73	□□□□□ -1.49
PEX1	YKL197C	RIM101	P33400	625 aa		5.7	□□□□□ -1.5
PEX1	YKL197C	MRPL32	P25348	183 aa		5.68	□□□□□ -1.5
PEX1	YKL197C	CDC27	P38042	758 aa		5.65	□□□□□ -1.5
PEX1	YKL197C	TFC8	Q12308	588 aa		5.57	□□□□□ -1.52
PEX1	YKL197C	OXP1	P28273	1286 aa		5.55	□□□□□ -1.52
PEX1	YKL197C	DCD1	P06773	312 aa		5.54	□□□□□ -1.52
PEX1	YKL197C	HO	P09932	586 aa		5.53	□□□□□ -1.52
PEX1	YKL197C	BCH2	P36122	765 aa		5.41	□□□□□ -1.54
PEX1	YKL197C	TAF7	Q05021	590 aa		5.41	□□□□□ -1.54
PEX1	YKL197C	YGL015C	P33199	130 aa		5.4	□□□□□ -1.54
PEX1	YKL197C	MAP2	P38174	421 aa	Known RBP	5.38	□□□□□ -1.55
PEX1	YKL197C	UBP10	P53874	792 aa	Predicted RBP	5.35	□□□□□ -1.55
PEX1	YKL197C	YLR271W	Q06152	274 aa		5.33	□□□□□ -1.56
PEX1	YKL197C	SCY1	P53009	804 aa		5.28	□□□□□ -1.56
PEX1	YKL197C	RSM7	P47150	247 aa		5.26	□□□□□ -1.57
PEX1	YKL197C	YAH1	Q12184	172 aa	Known RBP	5.26	□□□□□ -1.57
PEX1	YKL197C	BDF1	P35817	686 aa		5.26	□□□□□ -1.57
PEX1	YKL197C	EPS1	P40557	701 aa		5.25	□□□□□ -1.57
PEX1	YKL197C	PTP3	P40048	928 aa		5.25	□□□□□ -1.57
PEX1	YKL197C	SSP1	P38871	571 aa		5.24	□□□□□ -1.57
PEX1	YKL197C	YIL055C	P40523	627 aa	Known RBP	5.23	□□□□□ -1.57
PEX1	YKL197C	PSD2	P53037	1138 aa	Known RBP	5.23	□□□□□ -1.57
PEX1	YKL197C	URN1	Q06525	465 aa	Known RBP	5.23	□□□□□ -1.57
PEX1	YKL197C	AI2	P03876	854 aa		5.21	□□□□□ -1.58
PEX1	YKL197C	CST9	Q06032	482 aa		5.17	□□□□□ -1.58
PEX1	YKL197C	MON2	P48563	1636 aa	Predicted RBP	5.16	□□□□□ -1.58
PEX1	YKL197C	SLX5	P32828	619 aa	Known RBP	5.15	□□□□□ -1.58
PEX1	YKL197C	TGL3	P40308	642 aa		5.1	□□□□□ -1.59
PEX1	YKL197C	MGA2	P40578	1113 aa		5.1	□□□□□ -1.59
PEX1	YKL197C	BBC1	P47068	1157 aa		5.08	□□□□□ -1.6
PEX1	YKL197C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	5.06	□□□□□ -1.6	not detected
PEX1	YKL197C	RCR1	P38212	213 aa		5.05	□□□□□ -1.6
PEX1	YKL197C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	5.03	□□□□□ -1.6	not detected
PEX1	YKL197C	TY1B-DR4	Q07793	1604 aa		5.03	□□□□□ -1.6
PEX1	YKL197C	MST1	P07236	462 aa		5.03	□□□□□ -1.6
PEX1	YKL197C	MRM1	P25270	412 aa		5.03	□□□□□ -1.6
PEX1	YKL197C	INO80	P53115	1489 aa		5.02	□□□□□ -1.61
PEX1	YKL197C	TIF4632	P39936	914 aa	Known RBP	5.02	□□□□□ -1.61
PEX1	YKL197C	VPS29	P38759	282 aa		5.01	□□□□□ -1.61
PEX1	YKL197C	TCB3	Q03640	1545 aa	Known RBP	4.99	□□□□□ -1.61
PEX1	YKL197C	SIS2	P36024	562 aa		4.95	□□□□□ -1.62
PEX1	YKL197C	RAM2	P29703	316 aa		4.94	□□□□□ -1.62
PEX1	YKL197C	STS1	P38637	319 aa		4.94	□□□□□ -1.62
PEX1	YKL197C	RTG3	P38165	486 aa		4.92	□□□□□ -1.62
PEX1	YKL197C	BUD31	P25337	157 aa	Predicted RBP	4.9	□□□□□ -1.62
PEX1	YKL197C	SWR1	Q05471	1514 aa		4.9	□□□□□ -1.62
PEX1	YKL197C	YFR016C	P43597	1233 aa	Known RBP	4.9	□□□□□ -1.63
PEX1	YKL197C	YAP5	P40574	245 aa		4.9	□□□□□ -1.63
PEX1	YKL197C	EBP2	P36049	427 aa	Known RBP	4.89	□□□□□ -1.63
PEX1	YKL197C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
PEX1	YKL197C	YOR238W	Q08634	303 aa		4.87	□□□□□ -1.63
PEX1	YKL197C	DBP1	P24784	617 aa	Known RBP	4.86	□□□□□ -1.63
PEX1	YKL197C	SGS1	P35187	1447 aa		4.86	□□□□□ -1.63
PEX1	YKL197C	YFR006W	P43590	535 aa		4.85	□□□□□ -1.63
PEX1	YKL197C	PIB1	Q06651	286 aa		4.85	□□□□□ -1.63
PEX1	YKL197C	CAB3	P36076	571 aa		4.84	□□□□□ -1.63
PEX1	YKL197C	IOC4	Q04213	475 aa		4.84	□□□□□ -1.63
PEX1	YKL197C	MAK11	P20484	414 aa	Known RBP	4.83	□□□□□ -1.64
PEX1	YKL197C	EDS1	P38073	919 aa		4.81	□□□□□ -1.64
PEX1	YKL197C	YBL029C-A	Q3E756	94 aa		4.81	□□□□□ -1.64
PEX1	YKL197C	VMA1	P17255	1071 aa	Known RBP	4.81	□□□□□ -1.64
PEX1	YKL197C	NAP1	P25293	417 aa	Known RBP	4.8	□□□□□ -1.64
PEX1	YKL197C	VNX1	P42839	908 aa		4.79	□□□□□ -1.64
PEX1	YKL197C	SAM3	Q08986	587 aa		4.79	□□□□□ -1.64
PEX1	YKL197C	KOG1	P38873	1557 aa		4.79	□□□□□ -1.64
PEX1	YKL197C	HSL1	P34244	1518 aa		4.78	□□□□□ -1.64
PEX1	YKL197C	KRI1	P42846	591 aa	Known RBP	4.77	□□□□□ -1.65
PEX1	YKL197C	COQ8	P27697	501 aa		4.75	□□□□□ -1.65
PEX1	YKL197C	NST1	P53935	1240 aa		4.75	□□□□□ -1.65
PEX1	YKL197C	DNA2	P38859	1522 aa		4.74	□□□□□ -1.65
PEX1	YKL197C	DMA1	P38823	416 aa		4.74	□□□□□ -1.65
PEX1	YKL197C	YOL036W	Q08206	761 aa		4.73	□□□□□ -1.65
PEX1	YKL197C	IOC2	Q12072	812 aa		4.73	□□□□□ -1.65
PEX1	YKL197C	NOP2	P40991	618 aa	Known RBP	4.72	□□□□□ -1.65
PEX1	YKL197C	YRB30	P53107	440 aa	Predicted RBP	4.72	□□□□□ -1.65
PEX1	YKL197C	PTC3	P34221	468 aa	Known RBP	4.72	□□□□□ -1.65
PEX1	YKL197C	SOL3	P38858	249 aa		4.72	□□□□□ -1.65
PEX1	YKL197C	LEO1	P38439	464 aa		4.71	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms