RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W AFG2P32794 780 aa5.11□□□□□ -1.59
UPF3YGR072W BAP2P38084 609 aa5.11□□□□□ -1.59
UPF3YGR072W GPB2P39717 880 aa5.11□□□□□ -1.59
UPF3YGR072W MNN10P50108 393 aaKnown RBP5.11□□□□□ -1.59
UPF3YGR072W CTF4Q01454 927 aa5.11□□□□□ -1.59
UPF3YGR072W ADI1Q03677 179 aa5.11□□□□□ -1.59
UPF3YGR072W GAL10P04397 699 aa5.1□□□□□ -1.59
UPF3YGR072W SEC23P15303 768 aaKnown RBP5.1□□□□□ -1.59
UPF3YGR072W SRM1P21827 482 aa5.1□□□□□ -1.59
UPF3YGR072W MET4P32389 672 aa5.1□□□□□ -1.59
UPF3YGR072W YPL109CQ02981 657 aa5.1□□□□□ -1.59
UPF3YGR072W OXR1Q08952 273 aa5.1□□□□□ -1.59
UPF3YGR072W RAD53P22216 821 aa5.09□□□□□ -1.59
UPF3YGR072W AIM21P40563 679 aa5.09□□□□□ -1.59
UPF3YGR072W PHO23P50947 330 aa5.09□□□□□ -1.59
UPF3YGR072W TNA1P53322 534 aa5.09□□□□□ -1.59
UPF3YGR072W HOS3Q02959 697 aaKnown RBP5.09□□□□□ -1.59
UPF3YGR072W ACK1Q07622 623 aaPredicted RBP5.09□□□□□ -1.59
UPF3YGR072W RSB1Q08417 382 aa5.09□□□□□ -1.59
UPF3YGR072W PTC5Q12511 572 aa5.09□□□□□ -1.59
UPF3YGR072W CDC6P09119 513 aa5.08□□□□□ -1.6
UPF3YGR072W STE11P23561 717 aa5.08□□□□□ -1.6
UPF3YGR072W PMI40P29952 429 aaKnown RBP5.08□□□□□ -1.6
UPF3YGR072W PPX1P38698 397 aa5.08□□□□□ -1.6
UPF3YGR072W CHS7P38843 316 aa5.08□□□□□ -1.6
UPF3YGR072W FAA3P39002 694 aa5.08□□□□□ -1.6
UPF3YGR072W RXT3Q07458 294 aa5.08□□□□□ -1.6
UPF3YGR072W CMP2P14747 604 aa5.07□□□□□ -1.6
UPF3YGR072W SNF5P18480 905 aa5.07□□□□□ -1.6
UPF3YGR072W PIK1P39104 1066 aa5.07□□□□□ -1.6
UPF3YGR072W GPB1Q08886 897 aa5.07□□□□□ -1.6
UPF3YGR072W DED1P06634 604 aaKnown RBP5.06□□□□□ -1.6
UPF3YGR072W ALG3P38179 458 aa5.06□□□□□ -1.6
UPF3YGR072W SSF1P38789 453 aaPredicted RBP5.06□□□□□ -1.6
UPF3YGR072W HXK1P04806 485 aaKnown RBP5.05□□□□□ -1.6
UPF3YGR072W HEM3P28789 327 aa5.05□□□□□ -1.6
UPF3YGR072W PIC2P40035 300 aa5.05□□□□□ -1.6
UPF3YGR072W RSM24Q03976 319 aa5.05□□□□□ -1.6
UPF3YGR072W RPN3P40016 523 aaKnown RBP5.04□□□□□ -1.6
UPF3YGR072W YPL260WQ08977 551 aa5.04□□□□□ -1.6
UPF3YGR072W WHI5Q12416 295 aa5.04□□□□□ -1.6
UPF3YGR072W TAF13P11747 167 aa5.03□□□□□ -1.6
UPF3YGR072W RPT1P33299 467 aaKnown RBP5.03□□□□□ -1.6
UPF3YGR072W STM1P39015 273 aaKnown RBP5.03□□□□□ -1.6
UPF3YGR072W NOP7P53261 605 aaKnown RBP5.03□□□□□ -1.6
UPF3YGR072W KIN4Q01919 800 aa5.03□□□□□ -1.6
UPF3YGR072W MSC6Q08818 692 aaKnown RBP5.03□□□□□ -1.6
UPF3YGR072W RIB2Q12362 591 aaKnown RBP5.03□□□□□ -1.6
UPF3YGR072W PMA1P05030 918 aaKnown RBP5.02□□□□□ -1.61
UPF3YGR072W RFC5P38251 354 aa5.02□□□□□ -1.61
UPF3YGR072W YAP6Q03935 383 aa5.02□□□□□ -1.61
UPF3YGR072W SEC20P28791 383 aa5.01□□□□□ -1.61
UPF3YGR072W THI12P42883 340 aa5.01□□□□□ -1.61
UPF3YGR072W THI5P43534 340 aa5.01□□□□□ -1.61
UPF3YGR072W THI11P47183 340 aa5.01□□□□□ -1.61
UPF3YGR072W SNU71P53207 620 aaKnown RBP5.01□□□□□ -1.61
UPF3YGR072W VPS62P53285 467 aa5.01□□□□□ -1.61
UPF3YGR072W RAT1Q02792 1006 aaKnown RBP5.01□□□□□ -1.61
UPF3YGR072W YLR224WQ05947 369 aa5.01□□□□□ -1.61
UPF3YGR072W THI13Q07748 340 aa5.01□□□□□ -1.61
UPF3YGR072W VTS1Q08831 523 aaKnown RBP RIP-Chip data5.01□□□□□ -1.61not detected
UPF3YGR072W YFL054CP43549 646 aa5□□□□□ -1.61
UPF3YGR072W GTF1P53260 183 aaPredicted RBP5□□□□□ -1.61
UPF3YGR072W PBP1P53297 722 aaKnown RBP5□□□□□ -1.61
UPF3YGR072W ASF1P32447 279 aa4.99□□□□□ -1.61
UPF3YGR072W DEF1P35732 738 aaKnown RBP4.99□□□□□ -1.61
UPF3YGR072W MSS4P38994 779 aa4.99□□□□□ -1.61
UPF3YGR072W ROD1Q02805 837 aa4.99□□□□□ -1.61
UPF3YGR072W SEN54Q02825 467 aaPredicted RBP4.99□□□□□ -1.61
UPF3YGR072W URN1Q06525 465 aaKnown RBP4.99□□□□□ -1.61
UPF3YGR072W DCG1P32460 244 aa4.98□□□□□ -1.61
UPF3YGR072W GCV2P49095 1034 aa4.98□□□□□ -1.61
UPF3YGR072W PRE9P23638 258 aaKnown RBP4.97□□□□□ -1.61
UPF3YGR072W EMC1P25574 760 aa4.97□□□□□ -1.61
UPF3YGR072W MKK2P32491 506 aa4.97□□□□□ -1.61
UPF3YGR072W SIW14P53965 281 aa4.97□□□□□ -1.61
UPF3YGR072W MAP1Q01662 387 aaKnown RBP RIP-Chip data4.97□□□□□ -1.61not detected
UPF3YGR072W MCD1Q12158 566 aa4.97□□□□□ -1.61
UPF3YGR072W MRPS18P42847 217 aa4.96□□□□□ -1.62
UPF3YGR072W ENT3P47160 408 aa4.96□□□□□ -1.62
UPF3YGR072W YGR122WP53272 402 aa4.96□□□□□ -1.62
UPF3YGR072W PPM2Q08282 695 aa4.96□□□□□ -1.62
UPF3YGR072W HMI1Q12039 706 aa4.96□□□□□ -1.62
UPF3YGR072W SVS1Q12254 260 aa4.96□□□□□ -1.62
UPF3YGR072W YER152CP10356 443 aa4.95□□□□□ -1.62
UPF3YGR072W KIN2P13186 1147 aaKnown RBP4.95□□□□□ -1.62
UPF3YGR072W RGD1P38339 666 aa4.95□□□□□ -1.62
UPF3YGR072W AIM44Q99299 758 aa4.95□□□□□ -1.62
UPF3YGR072W APL1P27351 700 aa4.94□□□□□ -1.62
UPF3YGR072W HXT13P39924 564 aa4.94□□□□□ -1.62
UPF3YGR072W HXT17P53631 564 aa4.94□□□□□ -1.62
UPF3YGR072W HXT15P54854 567 aa4.94□□□□□ -1.62
UPF3YGR072W SIZ1Q04195 904 aa4.94□□□□□ -1.62
UPF3YGR072W SYP1P25623 870 aaKnown RBP4.93□□□□□ -1.62
UPF3YGR072W MLS1P30952 554 aa4.93□□□□□ -1.62
UPF3YGR072W SEC8P32855 1065 aa4.93□□□□□ -1.62
UPF3YGR072W IPL1P38991 367 aa4.93□□□□□ -1.62
UPF3YGR072W SIP5P40210 489 aaKnown RBP4.93□□□□□ -1.62
UPF3YGR072W GNP1P48813 663 aa4.93□□□□□ -1.62
UPF3YGR072W RAD2P07276 1031 aa4.92□□□□□ -1.62
Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms