RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C BAP2P38084 609 aa2.84□□□□□ -1.96
VPS54YDR027C ALG3P38179 458 aa2.84□□□□□ -1.96
VPS54YDR027C FAA3P39002 694 aa2.84□□□□□ -1.96
VPS54YDR027C MSC6Q08818 692 aaKnown RBP2.84□□□□□ -1.96
VPS54YDR027C YPL260WQ08977 551 aa2.84□□□□□ -1.96
VPS54YDR027C SPO21Q12411 609 aa2.84□□□□□ -1.96
VPS54YDR027C TAF13P11747 167 aa2.83□□□□□ -1.96
VPS54YDR027C RPN3P40016 523 aaKnown RBP2.83□□□□□ -1.96
VPS54YDR027C ROT1Q03691 256 aa2.83□□□□□ -1.96
VPS54YDR027C RSM24Q03976 319 aa2.83□□□□□ -1.96
VPS54YDR027C RPT1P33299 467 aaKnown RBP2.83□□□□□ -1.96
VPS54YDR027C PNS1Q12412 539 aa2.83□□□□□ -1.96
VPS54YDR027C HXK1P04806 485 aaKnown RBP2.82□□□□□ -1.96
VPS54YDR027C SNF5P18480 905 aa2.82□□□□□ -1.96
VPS54YDR027C PRE9P23638 258 aaKnown RBP2.82□□□□□ -1.96
VPS54YDR027C RFC5P38251 354 aa2.82□□□□□ -1.96
VPS54YDR027C PIC2P40035 300 aa2.82□□□□□ -1.96
VPS54YDR027C GIS1Q03833 894 aa2.82□□□□□ -1.96
VPS54YDR027C TAF7Q05021 590 aa2.82□□□□□ -1.96
VPS54YDR027C CMP2P14747 604 aa2.81□□□□□ -1.96
VPS54YDR027C RXT3Q07458 294 aa2.81□□□□□ -1.96
VPS54YDR027C WHI5Q12416 295 aa2.81□□□□□ -1.96
VPS54YDR027C SEC20P28791 383 aa2.81□□□□□ -1.96
VPS54YDR027C MRPS18P42847 217 aa2.81□□□□□ -1.96
VPS54YDR027C MCD1Q12158 566 aa2.81□□□□□ -1.96
VPS54YDR027C GAL10P04397 699 aa2.8□□□□□ -1.96
VPS54YDR027C KIN2P13186 1147 aaKnown RBP2.8□□□□□ -1.96
VPS54YDR027C PBP1P53297 722 aaKnown RBP2.8□□□□□ -1.96
VPS54YDR027C DOM34P33309 386 aa2.8□□□□□ -1.96
VPS54YDR027C TRM2P33753 639 aa2.8□□□□□ -1.96
VPS54YDR027C RAT1Q02792 1006 aaKnown RBP2.8□□□□□ -1.96
VPS54YDR027C ROD1Q02805 837 aa2.8□□□□□ -1.96
VPS54YDR027C PLB2Q03674 706 aa2.8□□□□□ -1.96
VPS54YDR027C DUS4Q06063 367 aa2.8□□□□□ -1.96
VPS54YDR027C SWR1Q05471 1514 aa2.79□□□□□ -1.96
VPS54YDR027C SIW14P53965 281 aa2.79□□□□□ -1.96
VPS54YDR027C ACK1Q07622 623 aaPredicted RBP2.79□□□□□ -1.96
VPS54YDR027C GPB1Q08886 897 aa2.79□□□□□ -1.96
VPS54YDR027C RGD1P38339 666 aa2.79□□□□□ -1.96
VPS54YDR027C ENT3P47160 408 aa2.79□□□□□ -1.96
VPS54YDR027C YGR122WP53272 402 aa2.79□□□□□ -1.96
VPS54YDR027C SVS1Q12254 260 aa2.79□□□□□ -1.96
VPS54YDR027C HCM1P25364 564 aa2.78□□□□□ -1.96
VPS54YDR027C APL1P27351 700 aa2.78□□□□□ -1.96
VPS54YDR027C MKK2P32491 506 aa2.78□□□□□ -1.96
VPS54YDR027C VTS1Q08831 523 aaKnown RBP RIP-Chip data2.78□□□□□ -1.96not detected
VPS54YDR027C PUS9Q12069 462 aa2.78□□□□□ -1.96
VPS54YDR027C STE11P23561 717 aa2.78□□□□□ -1.96
VPS54YDR027C CDC20P26309 610 aa2.78□□□□□ -1.96
VPS54YDR027C SEC8P32855 1065 aa2.78□□□□□ -1.96
VPS54YDR027C MNN10P50108 393 aaKnown RBP2.78□□□□□ -1.96
VPS54YDR027C MCM6P53091 1017 aaKnown RBP2.78□□□□□ -1.96
VPS54YDR027C MAP1Q01662 387 aaKnown RBP RIP-Chip data2.78□□□□□ -1.96not detected
VPS54YDR027C TMA10Q06177 86 aa2.78□□□□□ -1.96
VPS54YDR027C URN1Q06525 465 aaKnown RBP2.78□□□□□ -1.96
VPS54YDR027C SYP1P25623 870 aaKnown RBP2.77□□□□□ -1.97
VPS54YDR027C YFL054CP43549 646 aa2.77□□□□□ -1.97
VPS54YDR027C MSE1P48525 536 aa2.77□□□□□ -1.97
VPS54YDR027C MRL1Q06815 381 aa2.77□□□□□ -1.97
VPS54YDR027C TAD3Q9URQ3 322 aa2.77□□□□□ -1.97
VPS54YDR027C RAD2P07276 1031 aa2.76□□□□□ -1.97
VPS54YDR027C YER152CP10356 443 aa2.76□□□□□ -1.97
VPS54YDR027C SRM1P21827 482 aa2.76□□□□□ -1.97
VPS54YDR027C MLS1P30952 554 aa2.76□□□□□ -1.97
VPS54YDR027C CNN1P43618 361 aa2.76□□□□□ -1.97
VPS54YDR027C GTF1P53260 183 aaPredicted RBP2.76□□□□□ -1.97
VPS54YDR027C IPL1P38991 367 aa2.76□□□□□ -1.97
VPS54YDR027C LST4P34239 828 aa2.75□□□□□ -1.97
VPS54YDR027C SLD2P34252 453 aa2.75□□□□□ -1.97
VPS54YDR027C SIZ1Q04195 904 aa2.75□□□□□ -1.97
VPS54YDR027C RIB2Q12362 591 aaKnown RBP2.75□□□□□ -1.97
VPS54YDR027C DBP5P20449 482 aaKnown RBP2.75□□□□□ -1.97
VPS54YDR027C BAS1P22035 811 aa2.75□□□□□ -1.97
VPS54YDR027C RPS26AP39938 119 aaKnown RBP2.75□□□□□ -1.97
VPS54YDR027C RPS26BP39939 119 aaKnown RBP2.75□□□□□ -1.97
VPS54YDR027C YAP6Q03935 383 aa2.75□□□□□ -1.97
VPS54YDR027C NTO1Q12311 748 aa2.75□□□□□ -1.97
VPS54YDR027C CDC6P09119 513 aa2.75□□□□□ -1.97
VPS54YDR027C CYC8P14922 966 aa2.75□□□□□ -1.97
VPS54YDR027C EMC1P25574 760 aa2.75□□□□□ -1.97
VPS54YDR027C PMI40P29952 429 aaKnown RBP2.75□□□□□ -1.97
VPS54YDR027C MGE1P38523 228 aa2.75□□□□□ -1.97
VPS54YDR027C AIM21P40563 679 aa2.75□□□□□ -1.97
VPS54YDR027C VPS62P53285 467 aa2.75□□□□□ -1.97
VPS54YDR027C ATG13Q06628 738 aa2.75□□□□□ -1.97
VPS54YDR027C RAD27P26793 382 aa2.74□□□□□ -1.97
VPS54YDR027C HXT13P39924 564 aa2.74□□□□□ -1.97
VPS54YDR027C SUN4P53616 420 aa2.74□□□□□ -1.97
VPS54YDR027C HXT17P53631 564 aa2.74□□□□□ -1.97
VPS54YDR027C HXT15P54854 567 aa2.74□□□□□ -1.97
VPS54YDR027C YLR224WQ05947 369 aa2.74□□□□□ -1.97
VPS54YDR027C GNP1P48813 663 aa2.74□□□□□ -1.97
VPS54YDR027C GCR1P07261 785 aa2.73□□□□□ -1.97
VPS54YDR027C MCM7P38132 845 aa2.73□□□□□ -1.97
VPS54YDR027C GCV2P49095 1034 aa2.73□□□□□ -1.97
VPS54YDR027C HMI1Q12039 706 aa2.73□□□□□ -1.97
VPS54YDR027C MPH1P40562 993 aa2.73□□□□□ -1.97
VPS54YDR027C PHO23P50947 330 aa2.73□□□□□ -1.97
VPS54YDR027C MSC2Q03455 724 aa2.73□□□□□ -1.97
VPS54YDR027C NOP12Q08208 459 aaKnown RBP2.73□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms