Protein–RNA interactions for Protein: P0CX68

TY1A-LR1, Transposon Ty1-LR1 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-LR1P0CX68 NSR1YGR159C 1245 nt16.05■□□□□ 0.16
TY1A-LR1P0CX68 YML009W-BYML009W-B 477 nt15.43■□□□□ 0.06
TY1A-LR1P0CX68 MDJ1YFL016C 1536 nt15.07■□□□□ 0
TY1A-LR1P0CX68 YGR139WYGR139W 339 nt14.67□□□□□ -0.06
TY1A-LR1P0CX68 NOP1YDL014W 984 nt14.59□□□□□ -0.07
TY1A-LR1P0CX68 MOT3YMR070W 1473 nt14.55□□□□□ -0.08
TY1A-LR1P0CX68 Q0182Q0182 405 nt14.43□□□□□ -0.1
TY1A-LR1P0CX68 SSA3YBL075C 1950 nt13.75□□□□□ -0.21
TY1A-LR1P0CX68 NME1NME1 340 nt13.75□□□□□ -0.21
TY1A-LR1P0CX68 YJL027CYJL027C 417 nt13.71□□□□□ -0.21
TY1A-LR1P0CX68 CSM2YIL132C 642 nt13.26□□□□□ -0.29
TY1A-LR1P0CX68 DBP2YNL112W 1641 nt13.11□□□□□ -0.31
TY1A-LR1P0CX68 PAU21YOR394W 495 nt13.05□□□□□ -0.32
TY1A-LR1P0CX68 PAU22YPL282C 495 nt13.05□□□□□ -0.32
TY1A-LR1P0CX68 YBR190WYBR190W 312 nt12.99□□□□□ -0.33
TY1A-LR1P0CX68 ARO7YPR060C 771 nt12.9□□□□□ -0.34
TY1A-LR1P0CX68 SRX1YKL086W 384 nt12.85□□□□□ -0.35
TY1A-LR1P0CX68 YKL036CYKL036C 393 nt12.79□□□□□ -0.36
TY1A-LR1P0CX68 PAM17YKR065C 594 nt12.68□□□□□ -0.38
TY1A-LR1P0CX68 Q0297Q0297 156 nt12.64□□□□□ -0.39
TY1A-LR1P0CX68 RTC3YHR087W 336 nt12.59□□□□□ -0.39
TY1A-LR1P0CX68 REG2YBR050C 1017 nt12.55□□□□□ -0.4
TY1A-LR1P0CX68 PUT4YOR348C 1884 nt12.53□□□□□ -0.4
TY1A-LR1P0CX68 YDR509WYDR509W 348 nt12.38□□□□□ -0.43
TY1A-LR1P0CX68 BUR6YER159C 429 nt12.31□□□□□ -0.44
TY1A-LR1P0CX68 VAR1Q0140 1197 nt12.31□□□□□ -0.44
TY1A-LR1P0CX68 BMT5YIL096C 1011 nt12.23□□□□□ -0.45
TY1A-LR1P0CX68 Q0010Q0010 387 nt12.22□□□□□ -0.45
TY1A-LR1P0CX68 SPT5YML010W 3192 nt12.2□□□□□ -0.46
TY1A-LR1P0CX68 TRN1tP(UGG)A 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 SUF9tP(UGG)F 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 SUF8tP(UGG)H 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 tP(UGG)LtP(UGG)L 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 SUF7tP(UGG)M 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 tP(UGG)N1tP(UGG)N1 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 tP(UGG)N2tP(UGG)N2 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 tP(UGG)O1tP(UGG)O1 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 SUF11tP(UGG)O2 72 nt12.12□□□□□ -0.47
TY1A-LR1P0CX68 YCR051WYCR051W 669 nt12.08□□□□□ -0.48
TY1A-LR1P0CX68 ARE1YCR048W 1833 nt12.07□□□□□ -0.48
TY1A-LR1P0CX68 YIR018C-AYIR018C-A 138 nt12.05□□□□□ -0.48
TY1A-LR1P0CX68 SRN2YLR119W 642 nt12.03□□□□□ -0.48
TY1A-LR1P0CX68 ARA2YMR041C 1008 nt12.02□□□□□ -0.49
TY1A-LR1P0CX68 POA1YBR022W 534 nt12.02□□□□□ -0.49
TY1A-LR1P0CX68 SSA4YER103W 1929 nt12.01□□□□□ -0.49
TY1A-LR1P0CX68 Q0144Q0144 330 nt12□□□□□ -0.49
TY1A-LR1P0CX68 SEM1YDR363W-A 270 nt11.96□□□□□ -0.49
TY1A-LR1P0CX68 CCC1YLR220W 969 nt11.96□□□□□ -0.49
TY1A-LR1P0CX68 BSC6YOL137W 1494 nt11.91□□□□□ -0.5
TY1A-LR1P0CX68 YEL009C-AYEL009C-A 408 nt11.87□□□□□ -0.51
TY1A-LR1P0CX68 RVS167YDR388W 1449 nt11.86□□□□□ -0.51
TY1A-LR1P0CX68 SCJ1YMR214W 1134 nt11.86□□□□□ -0.51
TY1A-LR1P0CX68 YHR049C-AYHR049C-A 297 nt11.81□□□□□ -0.52
TY1A-LR1P0CX68 YLR122CYLR122C 378 nt11.8□□□□□ -0.52
TY1A-LR1P0CX68 SAH1YER043C 1350 nt11.75□□□□□ -0.53
TY1A-LR1P0CX68 BDF1YLR399C 2061 nt11.74□□□□□ -0.53
TY1A-LR1P0CX68 MET8YBR213W 825 nt11.73□□□□□ -0.53
TY1A-LR1P0CX68 CLB6YGR109C 1143 nt11.71□□□□□ -0.53
TY1A-LR1P0CX68 ABZ2YMR289W 1125 nt11.69□□□□□ -0.54
TY1A-LR1P0CX68 ARP10YDR106W 855 nt11.67□□□□□ -0.54
TY1A-LR1P0CX68 URN1YPR152C 1398 nt11.6□□□□□ -0.55
TY1A-LR1P0CX68 TOM20YGR082W 552 nt11.58□□□□□ -0.56
TY1A-LR1P0CX68 YCR099CYCR099C 468 nt11.57□□□□□ -0.56
TY1A-LR1P0CX68 OPI9YLR338W 858 nt11.57□□□□□ -0.56
TY1A-LR1P0CX68 TAT1YBR069C 1860 nt11.51□□□□□ -0.57
TY1A-LR1P0CX68 AI3Q0060 1248 nt11.49□□□□□ -0.57
TY1A-LR1P0CX68 UTP6YDR449C 1323 nt11.46□□□□□ -0.57
TY1A-LR1P0CX68 BUD23YCR047C 828 nt11.43□□□□□ -0.58
TY1A-LR1P0CX68 PET20YPL159C 762 nt11.43□□□□□ -0.58
TY1A-LR1P0CX68 URH1YDR400W 1023 nt11.42□□□□□ -0.58
TY1A-LR1P0CX68 LCP5YER127W 1074 nt11.41□□□□□ -0.58
TY1A-LR1P0CX68 PAC11YDR488C 1602 nt11.39□□□□□ -0.59
TY1A-LR1P0CX68 DEP1YAL013W 1218 nt11.36□□□□□ -0.59
TY1A-LR1P0CX68 SHR5YOL110W 714 nt11.36□□□□□ -0.59
TY1A-LR1P0CX68 AI5_BETAQ0075 1065 nt11.35□□□□□ -0.59
TY1A-LR1P0CX68 SKG1YKR100C 1068 nt11.34□□□□□ -0.59
TY1A-LR1P0CX68 HMT1YBR034C 1047 nt11.34□□□□□ -0.59
TY1A-LR1P0CX68 Q0142Q0142 177 nt11.32□□□□□ -0.6
TY1A-LR1P0CX68 RPP1BYDL130W 321 nt11.31□□□□□ -0.6
TY1A-LR1P0CX68 SCS3YGL126W 1143 nt11.3□□□□□ -0.6
TY1A-LR1P0CX68 snR78snR78 87 nt11.28□□□□□ -0.6
TY1A-LR1P0CX68 MEP2YNL142W 1500 nt11.27□□□□□ -0.61
TY1A-LR1P0CX68 PTC2YER089C 1395 nt11.24□□□□□ -0.61
TY1A-LR1P0CX68 NVJ2YPR091C 2313 nt11.23□□□□□ -0.61
TY1A-LR1P0CX68 YPL071CYPL071C 471 nt11.22□□□□□ -0.61
TY1A-LR1P0CX68 tP(UGG)O3tP(UGG)O3 72 nt11.2□□□□□ -0.62
TY1A-LR1P0CX68 YOL085CYOL085C 342 nt11.19□□□□□ -0.62
TY1A-LR1P0CX68 YNR068CYNR068C 819 nt11.16□□□□□ -0.62
TY1A-LR1P0CX68 NAB2YGL122C 1578 nt11.16□□□□□ -0.62
TY1A-LR1P0CX68 PUN1YLR414C 792 nt11.15□□□□□ -0.62
TY1A-LR1P0CX68 DCW1YKL046C 1350 nt11.14□□□□□ -0.63
TY1A-LR1P0CX68 Q0255Q0255 1419 nt11.12□□□□□ -0.63
TY1A-LR1P0CX68 PKP1YIL042C 1185 nt11.12□□□□□ -0.63
TY1A-LR1P0CX68 YHM2YMR241W 945 nt11.1□□□□□ -0.63
TY1A-LR1P0CX68 YPL168WYPL168W 1293 nt11.1□□□□□ -0.63
TY1A-LR1P0CX68 YJL118WYJL118W 660 nt11.09□□□□□ -0.63
TY1A-LR1P0CX68 YNL067W-AYNL067W-A 147 nt11.08□□□□□ -0.64
TY1A-LR1P0CX68 RPN10YHR200W 807 nt11.05□□□□□ -0.64
TY1A-LR1P0CX68 Q0017Q0017 162 nt11.05□□□□□ -0.64
TY1A-LR1P0CX68 YBR220CYBR220C 1683 nt11.04□□□□□ -0.64
Retrieved 100 of 7,029 protein–RNA pairs in 8.2 ms